Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm9924-202ENSMUST00000192760 2311 ntBASIC15.82■□□□□ 0.12
Limch1Q3UH68 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Gm28911-201ENSMUST00000188837 117 ntBASIC15.82■□□□□ 0.12
Limch1Q3UH68 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Limch1Q3UH68 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
Limch1Q3UH68 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Limch1Q3UH68 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Limch1Q3UH68 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Limch1Q3UH68 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Limch1Q3UH68 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Limch1Q3UH68 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Limch1Q3UH68 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC15.81■□□□□ 0.12
Limch1Q3UH68 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Limch1Q3UH68 Gm15678-201ENSMUST00000117573 960 ntBASIC15.81■□□□□ 0.12
Limch1Q3UH68 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Limch1Q3UH68 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Limch1Q3UH68 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Limch1Q3UH68 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Limch1Q3UH68 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Limch1Q3UH68 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC15.81■□□□□ 0.12
Limch1Q3UH68 Gm37795-201ENSMUST00000194216 2459 ntBASIC15.81■□□□□ 0.12
Limch1Q3UH68 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Limch1Q3UH68 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Limch1Q3UH68 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Limch1Q3UH68 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Limch1Q3UH68 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Limch1Q3UH68 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Limch1Q3UH68 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Limch1Q3UH68 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Limch1Q3UH68 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Limch1Q3UH68 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Limch1Q3UH68 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Gm13730-201ENSMUST00000121036 1462 ntBASIC15.8■□□□□ 0.12
Limch1Q3UH68 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Limch1Q3UH68 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC15.8■□□□□ 0.12
Limch1Q3UH68 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Gm15770-201ENSMUST00000117498 584 ntBASIC15.8■□□□□ 0.12
Limch1Q3UH68 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
Limch1Q3UH68 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Mir7654-201ENSMUST00000185082 70 ntBASIC15.8■□□□□ 0.12
Limch1Q3UH68 Gm7558-201ENSMUST00000193221 1165 ntBASIC15.8■□□□□ 0.12
Limch1Q3UH68 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Gm5279-201ENSMUST00000199575 745 ntBASIC15.8■□□□□ 0.12
Limch1Q3UH68 Gm18041-201ENSMUST00000218210 618 ntBASIC15.8■□□□□ 0.12
Limch1Q3UH68 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC15.8■□□□□ 0.12
Limch1Q3UH68 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Limch1Q3UH68 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 50.4 ms