Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col2a1P28481 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC15.03■□□□□ -0
Col2a1P28481 Gm44094-201ENSMUST00000204703 2030 ntBASIC15.03■□□□□ -0
Col2a1P28481 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC15.03■□□□□ -0
Col2a1P28481 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC15.03■□□□□ -0
Col2a1P28481 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC15.02■□□□□ -0
Col2a1P28481 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Col2a1P28481 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col2a1P28481 AC139054.1-201ENSMUST00000226898 1598 ntBASIC15.02■□□□□ -0
Col2a1P28481 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col2a1P28481 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col2a1P28481 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC15.02■□□□□ -0
Col2a1P28481 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC15.02■□□□□ -0
Col2a1P28481 Gm25214-201ENSMUST00000104573 129 ntBASIC15.02■□□□□ -0
Col2a1P28481 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC15.02■□□□□ -0
Col2a1P28481 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC15.02■□□□□ -0
Col2a1P28481 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC15.02■□□□□ -0
Col2a1P28481 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC15.02■□□□□ -0
Col2a1P28481 AC122371.3-201ENSMUST00000223402 1061 ntBASIC15.02■□□□□ -0
Col2a1P28481 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col2a1P28481 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC15.02■□□□□ -0
Col2a1P28481 Gm24526-201ENSMUST00000082921 158 ntBASIC15.02■□□□□ -0
Col2a1P28481 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col2a1P28481 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC15.02■□□□□ -0
Col2a1P28481 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col2a1P28481 Gm5421-201ENSMUST00000181698 2354 ntBASIC15.02■□□□□ -0
Col2a1P28481 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Col2a1P28481 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col2a1P28481 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col2a1P28481 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Col2a1P28481 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Col2a1P28481 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col2a1P28481 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col2a1P28481 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col2a1P28481 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Col2a1P28481 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col2a1P28481 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col2a1P28481 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col2a1P28481 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col2a1P28481 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Gm8908-201ENSMUST00000121633 1024 ntBASIC15.01□□□□□ -0.01
Col2a1P28481 Gm20482-202ENSMUST00000174729 825 ntBASIC15.01□□□□□ -0.01
Col2a1P28481 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
Col2a1P28481 Gm38000-201ENSMUST00000192390 1215 ntBASIC15.01□□□□□ -0.01
Col2a1P28481 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC15.01□□□□□ -0.01
Col2a1P28481 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC15.01□□□□□ -0.01
Col2a1P28481 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC15.01□□□□□ -0.01
Col2a1P28481 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Col2a1P28481 Gm4366-201ENSMUST00000201488 1342 ntBASIC15.01□□□□□ -0.01
Col2a1P28481 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC15.01□□□□□ -0.01
Col2a1P28481 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC15.01□□□□□ -0.01
Col2a1P28481 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Col2a1P28481 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Col2a1P28481 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC15.01□□□□□ -0.01
Col2a1P28481 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Gm5639-201ENSMUST00000122305 2403 ntBASIC15.01□□□□□ -0.01
Col2a1P28481 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Gm14381-201ENSMUST00000122105 414 ntBASIC15.01□□□□□ -0.01
Col2a1P28481 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC15.01□□□□□ -0.01
Col2a1P28481 Gm27243-201ENSMUST00000183964 521 ntBASIC15.01□□□□□ -0.01
Col2a1P28481 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC15.01□□□□□ -0.01
Col2a1P28481 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC15.01□□□□□ -0.01
Col2a1P28481 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 CT485787.1-201ENSMUST00000225617 968 ntBASIC15.01□□□□□ -0.01
Col2a1P28481 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col2a1P28481 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col2a1P28481 Gm2420-202ENSMUST00000202224 2249 ntBASIC15□□□□□ -0.01
Col2a1P28481 Gm37827-201ENSMUST00000194486 1542 ntBASIC15□□□□□ -0.01
Col2a1P28481 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC15□□□□□ -0.01
Col2a1P28481 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col2a1P28481 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col2a1P28481 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col2a1P28481 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col2a1P28481 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC15□□□□□ -0.01
Col2a1P28481 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 61.1 ms