Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC10.89□□□□□ -0.67
Cdx1P18111 Olfr140-202ENSMUST00000111506 3449 ntAPPRIS P1 TSL 2 BASIC10.89□□□□□ -0.67
Cdx1P18111 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC10.88□□□□□ -0.67
Cdx1P18111 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Tat-201ENSMUST00000001720 2375 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 C230014O12Rik-201ENSMUST00000134921 2668 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
Cdx1P18111 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC10.88□□□□□ -0.67
Cdx1P18111 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
Cdx1P18111 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC10.88□□□□□ -0.67
Cdx1P18111 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC10.88□□□□□ -0.67
Cdx1P18111 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Gm7774-201ENSMUST00000200064 533 ntBASIC10.88□□□□□ -0.67
Cdx1P18111 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC10.88□□□□□ -0.67
Cdx1P18111 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC10.88□□□□□ -0.67
Cdx1P18111 CT025555.1-201ENSMUST00000225901 1217 ntBASIC10.88□□□□□ -0.67
Cdx1P18111 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Cdx1P18111 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
Cdx1P18111 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Cdx1P18111 Rbm8a-206ENSMUST00000200647 2620 ntTSL 2 BASIC10.88□□□□□ -0.67
Cdx1P18111 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC10.87□□□□□ -0.67
Cdx1P18111 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC10.87□□□□□ -0.67
Cdx1P18111 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Cdx1P18111 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Gm18737-201ENSMUST00000173594 937 ntBASIC10.87□□□□□ -0.67
Cdx1P18111 Gm10499-201ENSMUST00000174094 934 ntBASIC10.87□□□□□ -0.67
Cdx1P18111 Gm27321-201ENSMUST00000185021 205 ntBASIC10.87□□□□□ -0.67
Cdx1P18111 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC10.87□□□□□ -0.67
Cdx1P18111 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC10.87□□□□□ -0.67
Cdx1P18111 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC10.87□□□□□ -0.67
Cdx1P18111 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC10.87□□□□□ -0.67
Cdx1P18111 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC10.87□□□□□ -0.67
Cdx1P18111 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Cdx1P18111 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC10.86□□□□□ -0.67
Cdx1P18111 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Rnf17-202ENSMUST00000223627 2077 ntBASIC10.86□□□□□ -0.67
Cdx1P18111 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC10.86□□□□□ -0.67
Cdx1P18111 Wdr4-207ENSMUST00000171171 4153 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Pbx1-205ENSMUST00000176540 6876 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC10.86□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms