Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC12.81□□□□□ -0.36
Lire1P11260 Gm44855-201ENSMUST00000205725 362 ntBASIC12.81□□□□□ -0.36
Lire1P11260 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC12.81□□□□□ -0.36
Lire1P11260 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Lire1P11260 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
Lire1P11260 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
Lire1P11260 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC12.81□□□□□ -0.36
Lire1P11260 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC12.81□□□□□ -0.36
Lire1P11260 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 AC125108.1-201ENSMUST00000218986 2330 ntBASIC12.8□□□□□ -0.36
Lire1P11260 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Lire1P11260 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Gfod2-201ENSMUST00000013294 4352 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC12.8□□□□□ -0.36
Lire1P11260 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC12.8□□□□□ -0.36
Lire1P11260 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Klk2-ps-201ENSMUST00000205342 571 ntBASIC12.8□□□□□ -0.36
Lire1P11260 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC12.8□□□□□ -0.36
Lire1P11260 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Lire1P11260 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Lire1P11260 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC12.8□□□□□ -0.36
Lire1P11260 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Gsdme-205ENSMUST00000170142 2133 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Map1b-203ENSMUST00000223725 2669 ntBASIC12.8□□□□□ -0.36
Lire1P11260 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC12.8□□□□□ -0.36
Lire1P11260 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lire1P11260 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Lire1P11260 St6galnac6-201ENSMUST00000072111 2277 ntAPPRIS P3 TSL 5 BASIC12.79□□□□□ -0.36
Lire1P11260 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lire1P11260 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lire1P11260 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lire1P11260 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lire1P11260 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC12.79□□□□□ -0.36
Lire1P11260 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lire1P11260 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lire1P11260 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Lire1P11260 Gm8749-201ENSMUST00000117737 331 ntBASIC12.79□□□□□ -0.36
Lire1P11260 Gm15321-201ENSMUST00000121290 288 ntBASIC12.79□□□□□ -0.36
Lire1P11260 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC12.79□□□□□ -0.36
Lire1P11260 Gm6944-201ENSMUST00000182449 1006 ntBASIC12.79□□□□□ -0.36
Lire1P11260 AC159376.1-201ENSMUST00000218504 630 ntBASIC12.79□□□□□ -0.36
Lire1P11260 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC12.79□□□□□ -0.36
Lire1P11260 AC238811.1-201ENSMUST00000225302 441 ntBASIC12.79□□□□□ -0.36
Lire1P11260 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lire1P11260 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lire1P11260 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Lire1P11260 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lire1P11260 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lire1P11260 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lire1P11260 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lire1P11260 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
Lire1P11260 Nudt18-202ENSMUST00000228554 3619 ntBASIC12.79□□□□□ -0.36
Lire1P11260 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lire1P11260 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lire1P11260 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lire1P11260 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lire1P11260 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lire1P11260 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Lire1P11260 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lire1P11260 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC12.78□□□□□ -0.36
Lire1P11260 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lire1P11260 Tle3-202ENSMUST00000159050 2304 ntTSL 5 BASIC12.78□□□□□ -0.36
Lire1P11260 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lire1P11260 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lire1P11260 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms