Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lmx1bO88609 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Lmx1bO88609 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lmx1bO88609 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Lmx1bO88609 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Lmx1bO88609 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Lmx1bO88609 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
Lmx1bO88609 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC19.41■□□□□ 0.7
Lmx1bO88609 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lmx1bO88609 Gm9959-201ENSMUST00000068277 390 ntBASIC19.41■□□□□ 0.7
Lmx1bO88609 Gm10232-201ENSMUST00000089221 720 ntBASIC19.41■□□□□ 0.7
Lmx1bO88609 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lmx1bO88609 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lmx1bO88609 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lmx1bO88609 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Lmx1bO88609 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lmx1bO88609 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lmx1bO88609 AC117245.4-201ENSMUST00000217388 1646 ntBASIC19.4■□□□□ 0.7
Lmx1bO88609 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lmx1bO88609 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lmx1bO88609 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Lmx1bO88609 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Lmx1bO88609 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Lmx1bO88609 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lmx1bO88609 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Lmx1bO88609 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lmx1bO88609 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC19.39■□□□□ 0.7
Lmx1bO88609 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Lmx1bO88609 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Lmx1bO88609 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lmx1bO88609 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC19.39■□□□□ 0.69
Lmx1bO88609 Gm45102-201ENSMUST00000207427 857 ntBASIC19.39■□□□□ 0.69
Lmx1bO88609 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lmx1bO88609 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lmx1bO88609 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lmx1bO88609 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Lmx1bO88609 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lmx1bO88609 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lmx1bO88609 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lmx1bO88609 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Lmx1bO88609 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC19.38■□□□□ 0.69
Lmx1bO88609 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Lmx1bO88609 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lmx1bO88609 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lmx1bO88609 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lmx1bO88609 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lmx1bO88609 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lmx1bO88609 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Lmx1bO88609 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lmx1bO88609 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lmx1bO88609 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Lmx1bO88609 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lmx1bO88609 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC19.36■□□□□ 0.69
Lmx1bO88609 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lmx1bO88609 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lmx1bO88609 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Lmx1bO88609 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Lmx1bO88609 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lmx1bO88609 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lmx1bO88609 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Lmx1bO88609 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
Lmx1bO88609 Gm6934-201ENSMUST00000194780 1905 ntBASIC19.35■□□□□ 0.69
Lmx1bO88609 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lmx1bO88609 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC19.35■□□□□ 0.69
Lmx1bO88609 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lmx1bO88609 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lmx1bO88609 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
Lmx1bO88609 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lmx1bO88609 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lmx1bO88609 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Lmx1bO88609 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC19.34■□□□□ 0.69
Lmx1bO88609 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Lmx1bO88609 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lmx1bO88609 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Lmx1bO88609 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Lmx1bO88609 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lmx1bO88609 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Lmx1bO88609 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
Lmx1bO88609 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC19.32■□□□□ 0.68
Lmx1bO88609 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lmx1bO88609 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lmx1bO88609 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Lmx1bO88609 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC19.32■□□□□ 0.68
Lmx1bO88609 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Lmx1bO88609 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC19.32■□□□□ 0.68
Lmx1bO88609 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Lmx1bO88609 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC19.31■□□□□ 0.68
Lmx1bO88609 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Lmx1bO88609 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Lmx1bO88609 Gm28731-201ENSMUST00000185564 1569 ntBASIC19.31■□□□□ 0.68
Lmx1bO88609 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Lmx1bO88609 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC19.3■□□□□ 0.68
Lmx1bO88609 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Lmx1bO88609 Gm16464-201ENSMUST00000117815 1095 ntBASIC19.3■□□□□ 0.68
Lmx1bO88609 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC19.3■□□□□ 0.68
Lmx1bO88609 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC19.3■□□□□ 0.68
Lmx1bO88609 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lmx1bO88609 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Lmx1bO88609 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
Lmx1bO88609 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms