Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC14.68□□□□□ -0.06
Trav11A0A0B4J1J9 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Trav11A0A0B4J1J9 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav11A0A0B4J1J9 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav11A0A0B4J1J9 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Trav11A0A0B4J1J9 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav11A0A0B4J1J9 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trav11A0A0B4J1J9 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trav11A0A0B4J1J9 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trav11A0A0B4J1J9 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav11A0A0B4J1J9 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav11A0A0B4J1J9 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
Trav11A0A0B4J1J9 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Trav11A0A0B4J1J9 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trav11A0A0B4J1J9 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav11A0A0B4J1J9 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Trav11A0A0B4J1J9 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
Trav11A0A0B4J1J9 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav11A0A0B4J1J9 Gm9812-201ENSMUST00000061934 968 ntBASIC14.66□□□□□ -0.06
Trav11A0A0B4J1J9 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav11A0A0B4J1J9 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav11A0A0B4J1J9 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC14.65□□□□□ -0.06
Trav11A0A0B4J1J9 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trav11A0A0B4J1J9 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC14.65□□□□□ -0.06
Trav11A0A0B4J1J9 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav11A0A0B4J1J9 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trav11A0A0B4J1J9 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Trav11A0A0B4J1J9 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav11A0A0B4J1J9 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav11A0A0B4J1J9 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav11A0A0B4J1J9 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC14.65□□□□□ -0.07
Trav11A0A0B4J1J9 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
Trav11A0A0B4J1J9 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Trav11A0A0B4J1J9 Gm7199-201ENSMUST00000118327 1485 ntBASIC14.64□□□□□ -0.07
Trav11A0A0B4J1J9 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trav11A0A0B4J1J9 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trav11A0A0B4J1J9 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC14.64□□□□□ -0.07
Trav11A0A0B4J1J9 AC153911.1-201ENSMUST00000220378 758 ntBASIC14.64□□□□□ -0.07
Trav11A0A0B4J1J9 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trav11A0A0B4J1J9 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC14.64□□□□□ -0.07
Trav11A0A0B4J1J9 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC14.64□□□□□ -0.07
Trav11A0A0B4J1J9 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC14.64□□□□□ -0.07
Trav11A0A0B4J1J9 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC14.63□□□□□ -0.07
Trav11A0A0B4J1J9 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC14.63□□□□□ -0.07
Trav11A0A0B4J1J9 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trav11A0A0B4J1J9 AC153524.1-201ENSMUST00000220436 1935 ntBASIC14.63□□□□□ -0.07
Trav11A0A0B4J1J9 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trav11A0A0B4J1J9 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Trav11A0A0B4J1J9 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trav11A0A0B4J1J9 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trav11A0A0B4J1J9 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trav11A0A0B4J1J9 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trav11A0A0B4J1J9 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trav11A0A0B4J1J9 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trav11A0A0B4J1J9 Gm12504-201ENSMUST00000120860 2231 ntBASIC14.62□□□□□ -0.07
Trav11A0A0B4J1J9 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trav11A0A0B4J1J9 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trav11A0A0B4J1J9 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trav11A0A0B4J1J9 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Trav11A0A0B4J1J9 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC14.62□□□□□ -0.07
Trav11A0A0B4J1J9 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Trav11A0A0B4J1J9 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Trav11A0A0B4J1J9 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trav11A0A0B4J1J9 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trav11A0A0B4J1J9 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trav11A0A0B4J1J9 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trav11A0A0B4J1J9 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Trav11A0A0B4J1J9 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC14.61□□□□□ -0.07
Trav11A0A0B4J1J9 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trav11A0A0B4J1J9 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Trav11A0A0B4J1J9 AC122317.2-201ENSMUST00000218708 1248 ntBASIC14.61□□□□□ -0.07
Trav11A0A0B4J1J9 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trav11A0A0B4J1J9 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trav11A0A0B4J1J9 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC14.61□□□□□ -0.07
Trav11A0A0B4J1J9 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trav11A0A0B4J1J9 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Trav11A0A0B4J1J9 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Trav11A0A0B4J1J9 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC14.6□□□□□ -0.07
Trav11A0A0B4J1J9 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Trav11A0A0B4J1J9 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Trav11A0A0B4J1J9 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC14.6□□□□□ -0.07
Trav11A0A0B4J1J9 Terc-201ENSMUST00000082862 423 ntBASIC14.6□□□□□ -0.07
Trav11A0A0B4J1J9 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Trav11A0A0B4J1J9 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Trav11A0A0B4J1J9 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Trav11A0A0B4J1J9 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Trav11A0A0B4J1J9 Mir3960-201ENSMUST00000198213 73 ntBASIC14.59□□□□□ -0.07
Trav11A0A0B4J1J9 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Trav11A0A0B4J1J9 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Trav11A0A0B4J1J9 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Trav11A0A0B4J1J9 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Trav11A0A0B4J1J9 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
Trav11A0A0B4J1J9 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Trav11A0A0B4J1J9 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.07
Trav11A0A0B4J1J9 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
Trav11A0A0B4J1J9 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trav11A0A0B4J1J9 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trav11A0A0B4J1J9 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trav11A0A0B4J1J9 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Trav11A0A0B4J1J9 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC14.58□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms