Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm42612-201ENSMUST00000197986 623 ntBASIC14.82□□□□□ -0.04
Prpf40aQ9R1C7 Gm5279-201ENSMUST00000199575 745 ntBASIC14.82□□□□□ -0.04
Prpf40aQ9R1C7 Gm43170-201ENSMUST00000199827 612 ntBASIC14.82□□□□□ -0.04
Prpf40aQ9R1C7 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC14.82□□□□□ -0.04
Prpf40aQ9R1C7 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC14.82□□□□□ -0.04
Prpf40aQ9R1C7 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Prpf40aQ9R1C7 Gm18934-201ENSMUST00000216671 1044 ntBASIC14.82□□□□□ -0.04
Prpf40aQ9R1C7 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC14.82□□□□□ -0.04
Prpf40aQ9R1C7 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Prpf40aQ9R1C7 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Prpf40aQ9R1C7 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Prpf40aQ9R1C7 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
Prpf40aQ9R1C7 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Prpf40aQ9R1C7 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC14.82□□□□□ -0.04
Prpf40aQ9R1C7 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Prpf40aQ9R1C7 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Prpf40aQ9R1C7 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Prpf40aQ9R1C7 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Prpf40aQ9R1C7 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Prpf40aQ9R1C7 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Prpf40aQ9R1C7 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Prpf40aQ9R1C7 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC14.82□□□□□ -0.04
Prpf40aQ9R1C7 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Prpf40aQ9R1C7 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Gm7488-201ENSMUST00000117148 684 ntBASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Prpf40aQ9R1C7 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 AC155298.2-201ENSMUST00000225485 6226 ntBASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Gm5354-201ENSMUST00000182417 973 ntBASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Gm43936-201ENSMUST00000203987 490 ntTSL 5 BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Gm6218-201ENSMUST00000219812 628 ntBASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Gm19220-201ENSMUST00000222682 803 ntBASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Gm37015-201ENSMUST00000192763 1521 ntBASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Prpf40aQ9R1C7 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 47.9 ms