Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp47Q8BY87 Gm9200-201ENSMUST00000118513 1354 ntBASIC18.89■□□□□ 0.61
Usp47Q8BY87 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp47Q8BY87 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp47Q8BY87 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp47Q8BY87 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC18.89■□□□□ 0.61
Usp47Q8BY87 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Usp47Q8BY87 Gm5989-201ENSMUST00000096092 2077 ntBASIC18.89■□□□□ 0.61
Usp47Q8BY87 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC18.89■□□□□ 0.61
Usp47Q8BY87 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp47Q8BY87 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Usp47Q8BY87 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Usp47Q8BY87 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp47Q8BY87 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
Usp47Q8BY87 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp47Q8BY87 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Usp47Q8BY87 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Usp47Q8BY87 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp47Q8BY87 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Usp47Q8BY87 Gm10327-201ENSMUST00000105222 1002 ntBASIC18.88■□□□□ 0.61
Usp47Q8BY87 Gm13392-201ENSMUST00000117708 150 ntBASIC18.88■□□□□ 0.61
Usp47Q8BY87 Gm12384-201ENSMUST00000119228 919 ntBASIC18.88■□□□□ 0.61
Usp47Q8BY87 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC18.88■□□□□ 0.61
Usp47Q8BY87 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC18.88■□□□□ 0.61
Usp47Q8BY87 AC154276.1-201ENSMUST00000228874 1299 ntBASIC18.88■□□□□ 0.61
Usp47Q8BY87 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Usp47Q8BY87 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC18.88■□□□□ 0.61
Usp47Q8BY87 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp47Q8BY87 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp47Q8BY87 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC18.88■□□□□ 0.61
Usp47Q8BY87 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Usp47Q8BY87 Gm45242-201ENSMUST00000210666 2129 ntBASIC18.88■□□□□ 0.61
Usp47Q8BY87 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC18.88■□□□□ 0.61
Usp47Q8BY87 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp47Q8BY87 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Usp47Q8BY87 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Usp47Q8BY87 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp47Q8BY87 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Usp47Q8BY87 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp47Q8BY87 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp47Q8BY87 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC18.87■□□□□ 0.61
Usp47Q8BY87 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp47Q8BY87 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp47Q8BY87 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Usp47Q8BY87 Gm38049-201ENSMUST00000195698 1372 ntBASIC18.87■□□□□ 0.61
Usp47Q8BY87 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Usp47Q8BY87 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp47Q8BY87 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
Usp47Q8BY87 Gm5620-201ENSMUST00000077991 1348 ntBASIC18.87■□□□□ 0.61
Usp47Q8BY87 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Usp47Q8BY87 Mir686-201ENSMUST00000102174 109 ntBASIC18.87■□□□□ 0.61
Usp47Q8BY87 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC18.87■□□□□ 0.61
Usp47Q8BY87 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC18.87■□□□□ 0.61
Usp47Q8BY87 Gm2639-201ENSMUST00000156881 1297 ntBASIC18.87■□□□□ 0.61
Usp47Q8BY87 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC18.87■□□□□ 0.61
Usp47Q8BY87 Gm9728-201ENSMUST00000200197 1055 ntBASIC18.87■□□□□ 0.61
Usp47Q8BY87 Gm44985-201ENSMUST00000206202 1016 ntBASIC18.87■□□□□ 0.61
Usp47Q8BY87 Tyms-ps-201ENSMUST00000219550 915 ntBASIC18.87■□□□□ 0.61
Usp47Q8BY87 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp47Q8BY87 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Usp47Q8BY87 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Usp47Q8BY87 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
Usp47Q8BY87 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp47Q8BY87 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Usp47Q8BY87 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp47Q8BY87 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC18.87■□□□□ 0.61
Usp47Q8BY87 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
Usp47Q8BY87 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp47Q8BY87 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Gm8565-201ENSMUST00000183259 1014 ntBASIC18.86■□□□□ 0.61
Usp47Q8BY87 Gm43630-201ENSMUST00000201550 776 ntBASIC18.86■□□□□ 0.61
Usp47Q8BY87 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp47Q8BY87 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp47Q8BY87 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp47Q8BY87 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp47Q8BY87 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC18.85■□□□□ 0.61
Usp47Q8BY87 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms