Protein–RNA interactions for Protein: Q8BXJ2

Trerf1, Transcriptional-regulating factor 1, mousemouse

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trerf1Q8BXJ2 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 Gm15393-201ENSMUST00000120499 219 ntBASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 AC153872.1-201ENSMUST00000199539 128 ntBASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 Gm44414-201ENSMUST00000203660 2109 ntBASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trerf1Q8BXJ2 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Gm5866-201ENSMUST00000177881 973 ntBASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Gm24694-201ENSMUST00000180054 110 ntBASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Gm27663-201ENSMUST00000184839 110 ntBASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Gm21470-201ENSMUST00000187680 696 ntBASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Gm7390-201ENSMUST00000212452 1216 ntBASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Gm45011-201ENSMUST00000207620 2297 ntBASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trerf1Q8BXJ2 Sorbs1-203ENSMUST00000165212 2175 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Gm12626-201ENSMUST00000117339 1983 ntBASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Gm12623-201ENSMUST00000119849 1983 ntBASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Gm15321-201ENSMUST00000121290 288 ntBASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Gm7730-201ENSMUST00000212486 454 ntBASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trerf1Q8BXJ2 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC14.23□□□□□ -0.13
Trerf1Q8BXJ2 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Trerf1Q8BXJ2 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trerf1Q8BXJ2 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms