Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Usf1Q61069 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Usf1Q61069 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC12.22□□□□□ -0.45
Usf1Q61069 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Usf1Q61069 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Usf1Q61069 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usf1Q61069 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usf1Q61069 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usf1Q61069 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usf1Q61069 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usf1Q61069 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usf1Q61069 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usf1Q61069 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Usf1Q61069 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC12.21□□□□□ -0.45
Usf1Q61069 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Usf1Q61069 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usf1Q61069 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usf1Q61069 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usf1Q61069 Gm11637-201ENSMUST00000120601 592 ntBASIC12.21□□□□□ -0.45
Usf1Q61069 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Usf1Q61069 1700034G24Rik-202ENSMUST00000183186 1081 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Usf1Q61069 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Usf1Q61069 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usf1Q61069 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC12.21□□□□□ -0.45
Usf1Q61069 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC12.21□□□□□ -0.45
Usf1Q61069 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Usf1Q61069 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usf1Q61069 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usf1Q61069 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Usf1Q61069 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Usf1Q61069 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Usf1Q61069 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Usf1Q61069 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Usf1Q61069 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC12.21□□□□□ -0.46
Usf1Q61069 Gm14608-201ENSMUST00000120030 1553 ntBASIC12.21□□□□□ -0.46
Usf1Q61069 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Usf1Q61069 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Usf1Q61069 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Usf1Q61069 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
Usf1Q61069 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Usf1Q61069 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC12.21□□□□□ -0.46
Usf1Q61069 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Usf1Q61069 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Usf1Q61069 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usf1Q61069 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC12.2□□□□□ -0.46
Usf1Q61069 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usf1Q61069 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usf1Q61069 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usf1Q61069 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usf1Q61069 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usf1Q61069 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usf1Q61069 Gm44645-201ENSMUST00000205492 1653 ntBASIC12.2□□□□□ -0.46
Usf1Q61069 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usf1Q61069 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usf1Q61069 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usf1Q61069 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usf1Q61069 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
Usf1Q61069 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usf1Q61069 Gm16479-201ENSMUST00000121706 932 ntBASIC12.2□□□□□ -0.46
Usf1Q61069 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Usf1Q61069 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Usf1Q61069 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC12.2□□□□□ -0.46
Usf1Q61069 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC12.2□□□□□ -0.46
Usf1Q61069 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC12.2□□□□□ -0.46
Usf1Q61069 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC12.2□□□□□ -0.46
Usf1Q61069 Gm5781-201ENSMUST00000219792 443 ntBASIC12.2□□□□□ -0.46
Usf1Q61069 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usf1Q61069 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usf1Q61069 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usf1Q61069 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC12.2□□□□□ -0.46
Usf1Q61069 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Usf1Q61069 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Usf1Q61069 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usf1Q61069 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usf1Q61069 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usf1Q61069 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usf1Q61069 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
Usf1Q61069 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Usf1Q61069 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usf1Q61069 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Usf1Q61069 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usf1Q61069 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Usf1Q61069 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usf1Q61069 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Usf1Q61069 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usf1Q61069 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usf1Q61069 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC12.19□□□□□ -0.46
Usf1Q61069 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Usf1Q61069 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms