Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Nr1h4Q60641 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Nr1h4Q60641 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC12.83□□□□□ -0.35
Nr1h4Q60641 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC12.83□□□□□ -0.35
Nr1h4Q60641 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Clpb-211ENSMUST00000209579 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nr1h4Q60641 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC12.83□□□□□ -0.36
Nr1h4Q60641 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Gm27741-201ENSMUST00000185060 237 ntBASIC12.83□□□□□ -0.36
Nr1h4Q60641 Gm21470-201ENSMUST00000187680 696 ntBASIC12.83□□□□□ -0.36
Nr1h4Q60641 Gm43125-201ENSMUST00000201724 730 ntBASIC12.83□□□□□ -0.36
Nr1h4Q60641 AC131997.1-201ENSMUST00000228611 1229 ntBASIC12.83□□□□□ -0.36
Nr1h4Q60641 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Nr1h4Q60641 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Gm5939-201ENSMUST00000119613 2874 ntBASIC12.83□□□□□ -0.36
Nr1h4Q60641 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Nr1h4Q60641 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nr1h4Q60641 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
Nr1h4Q60641 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Gm24543-201ENSMUST00000103867 82 ntBASIC12.82□□□□□ -0.36
Nr1h4Q60641 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Gm15653-201ENSMUST00000119247 907 ntBASIC12.82□□□□□ -0.36
Nr1h4Q60641 Gm12428-201ENSMUST00000119844 727 ntBASIC12.82□□□□□ -0.36
Nr1h4Q60641 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC12.82□□□□□ -0.36
Nr1h4Q60641 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC12.82□□□□□ -0.36
Nr1h4Q60641 Gm4804-201ENSMUST00000182234 999 ntBASIC12.82□□□□□ -0.36
Nr1h4Q60641 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Nr1h4Q60641 AC153872.1-201ENSMUST00000199539 128 ntBASIC12.82□□□□□ -0.36
Nr1h4Q60641 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC12.82□□□□□ -0.36
Nr1h4Q60641 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Nr1h4Q60641 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Nr1h4Q60641 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Nr1h4Q60641 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Nr1h4Q60641 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Nr1h4Q60641 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Nr1h4Q60641 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Nr1h4Q60641 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Nr1h4Q60641 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Nr1h4Q60641 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Nr1h4Q60641 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Nr1h4Q60641 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 55.6 ms