Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Atg10-201ENSMUST00000022119 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Rnf40Q3U319 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Rnf40Q3U319 Gm13722-201ENSMUST00000117964 3066 ntBASIC14.02□□□□□ -0.16
Rnf40Q3U319 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Rnf40Q3U319 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Rnf40Q3U319 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Rnf40Q3U319 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC14.02□□□□□ -0.16
Rnf40Q3U319 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Rnf40Q3U319 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Rnf40Q3U319 Gm25990-201ENSMUST00000102440 86 ntBASIC14.02□□□□□ -0.17
Rnf40Q3U319 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Rnf40Q3U319 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
Rnf40Q3U319 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
Rnf40Q3U319 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
Rnf40Q3U319 Gm17066-202ENSMUST00000165350 1113 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Rnf40Q3U319 1700029E06Rik-201ENSMUST00000189036 757 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Rnf40Q3U319 Gm31831-201ENSMUST00000196240 684 ntTSL 3 BASIC14.02□□□□□ -0.17
Rnf40Q3U319 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC14.02□□□□□ -0.17
Rnf40Q3U319 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Rnf40Q3U319 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Rnf40Q3U319 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Rnf40Q3U319 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Rnf40Q3U319 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC14.02□□□□□ -0.17
Rnf40Q3U319 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.17
Rnf40Q3U319 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Rnf40Q3U319 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Rnf40Q3U319 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Rnf40Q3U319 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Rnf40Q3U319 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Rnf40Q3U319 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Rnf40Q3U319 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Gm26812-202ENSMUST00000181776 599 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Gm17971-201ENSMUST00000190239 806 ntBASIC14.01□□□□□ -0.17
Rnf40Q3U319 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Gm44357-201ENSMUST00000195897 142 ntBASIC14.01□□□□□ -0.17
Rnf40Q3U319 Gm19658-201ENSMUST00000196231 138 ntBASIC14.01□□□□□ -0.17
Rnf40Q3U319 Gm44367-201ENSMUST00000196836 138 ntBASIC14.01□□□□□ -0.17
Rnf40Q3U319 Gm44350-201ENSMUST00000197197 138 ntBASIC14.01□□□□□ -0.17
Rnf40Q3U319 Gm44390-201ENSMUST00000197533 144 ntBASIC14.01□□□□□ -0.17
Rnf40Q3U319 Gm44313-201ENSMUST00000198018 138 ntBASIC14.01□□□□□ -0.17
Rnf40Q3U319 Gm44486-201ENSMUST00000198508 138 ntBASIC14.01□□□□□ -0.17
Rnf40Q3U319 Gm44314-201ENSMUST00000199263 138 ntBASIC14.01□□□□□ -0.17
Rnf40Q3U319 Gm44394-201ENSMUST00000199558 138 ntBASIC14.01□□□□□ -0.17
Rnf40Q3U319 Gm44484-201ENSMUST00000199873 138 ntBASIC14.01□□□□□ -0.17
Rnf40Q3U319 Gm44466-201ENSMUST00000200264 138 ntBASIC14.01□□□□□ -0.17
Rnf40Q3U319 Gm44359-201ENSMUST00000200671 138 ntBASIC14.01□□□□□ -0.17
Rnf40Q3U319 Gm8679-201ENSMUST00000210651 1036 ntBASIC14.01□□□□□ -0.17
Rnf40Q3U319 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Rnf40Q3U319 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Rnf40Q3U319 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Rnf40Q3U319 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Rnf40Q3U319 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Rnf40Q3U319 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Rnf40Q3U319 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Rnf40Q3U319 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Rnf40Q3U319 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
Rnf40Q3U319 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Rnf40Q3U319 Gm15459-201ENSMUST00000117405 1941 ntBASIC14□□□□□ -0.17
Rnf40Q3U319 Gm8355-201ENSMUST00000177767 1941 ntBASIC14□□□□□ -0.17
Rnf40Q3U319 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Rnf40Q3U319 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC14□□□□□ -0.17
Rnf40Q3U319 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms