Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm8410-201ENSMUST00000117225 605 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm13453-201ENSMUST00000118708 357 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm18737-201ENSMUST00000173594 937 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm29310-201ENSMUST00000185468 696 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm21825-201ENSMUST00000185728 696 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm29109-201ENSMUST00000185895 696 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm21896-201ENSMUST00000186520 696 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm21873-201ENSMUST00000186728 696 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm21794-201ENSMUST00000187056 696 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm21880-201ENSMUST00000187275 696 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm21826-201ENSMUST00000187451 696 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm21198-201ENSMUST00000188393 696 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm21749-201ENSMUST00000189343 696 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm21901-201ENSMUST00000189568 696 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm29424-201ENSMUST00000189716 696 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm28599-201ENSMUST00000189838 694 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm21867-201ENSMUST00000189917 696 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm29269-201ENSMUST00000190087 696 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm21722-201ENSMUST00000190153 696 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm28423-201ENSMUST00000190701 696 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm21899-201ENSMUST00000190745 696 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm21910-201ENSMUST00000191163 696 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm21849-201ENSMUST00000191571 696 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm28678-201ENSMUST00000191593 696 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm20910-201ENSMUST00000193268 696 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm21871-201ENSMUST00000194621 696 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 AA619741-201ENSMUST00000195095 646 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm10176-201ENSMUST00000159707 2264 ntBASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Col28a1Q2UY11 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.31
Col28a1Q2UY11 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Col28a1Q2UY11 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Gm18027-201ENSMUST00000218947 619 ntBASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col28a1Q2UY11 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 53.5 ms