Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Gm37297-201ENSMUST00000192974 2384 ntBASIC11.48□□□□□ -0.57
Col8a1Q00780 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Col8a1Q00780 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Col8a1Q00780 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC11.47□□□□□ -0.57
Col8a1Q00780 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC11.47□□□□□ -0.57
Col8a1Q00780 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 Gm14263-201ENSMUST00000117955 746 ntBASIC11.47□□□□□ -0.57
Col8a1Q00780 Gm7029-201ENSMUST00000173226 450 ntBASIC11.47□□□□□ -0.57
Col8a1Q00780 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC11.47□□□□□ -0.57
Col8a1Q00780 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC11.47□□□□□ -0.57
Col8a1Q00780 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Col8a1Q00780 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Col8a1Q00780 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Col8a1Q00780 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Col8a1Q00780 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC11.47□□□□□ -0.57
Col8a1Q00780 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC11.47□□□□□ -0.57
Col8a1Q00780 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC11.47□□□□□ -0.57
Col8a1Q00780 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col8a1Q00780 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Col8a1Q00780 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col8a1Q00780 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Col8a1Q00780 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col8a1Q00780 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col8a1Q00780 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col8a1Q00780 Gm13730-201ENSMUST00000121036 1462 ntBASIC11.46□□□□□ -0.57
Col8a1Q00780 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col8a1Q00780 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Col8a1Q00780 Gm3756-201ENSMUST00000169182 1355 ntBASIC11.46□□□□□ -0.57
Col8a1Q00780 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col8a1Q00780 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col8a1Q00780 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col8a1Q00780 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col8a1Q00780 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC11.46□□□□□ -0.57
Col8a1Q00780 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
Col8a1Q00780 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
Col8a1Q00780 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC11.46□□□□□ -0.57
Col8a1Q00780 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col8a1Q00780 Gm13297-201ENSMUST00000120205 934 ntBASIC11.46□□□□□ -0.57
Col8a1Q00780 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Col8a1Q00780 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC11.46□□□□□ -0.57
Col8a1Q00780 Gm24514-201ENSMUST00000174961 285 ntBASIC11.46□□□□□ -0.57
Col8a1Q00780 AU022133-201ENSMUST00000200601 873 ntBASIC11.46□□□□□ -0.57
Col8a1Q00780 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Col8a1Q00780 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC11.46□□□□□ -0.57
Col8a1Q00780 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col8a1Q00780 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col8a1Q00780 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Col8a1Q00780 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col8a1Q00780 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col8a1Q00780 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col8a1Q00780 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col8a1Q00780 Gm10146-201ENSMUST00000072739 309 ntBASIC11.46□□□□□ -0.57
Col8a1Q00780 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col8a1Q00780 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Col8a1Q00780 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC11.46□□□□□ -0.57
Col8a1Q00780 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Col8a1Q00780 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col8a1Q00780 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col8a1Q00780 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col8a1Q00780 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC11.46□□□□□ -0.58
Col8a1Q00780 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col8a1Q00780 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC11.46□□□□□ -0.58
Col8a1Q00780 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col8a1Q00780 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Col8a1Q00780 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col8a1Q00780 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC11.46□□□□□ -0.58
Col8a1Q00780 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC11.46□□□□□ -0.58
Col8a1Q00780 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 41.8 ms