Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rfx1P48377 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rfx1P48377 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rfx1P48377 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx1P48377 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
Rfx1P48377 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx1P48377 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx1P48377 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx1P48377 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx1P48377 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Rfx1P48377 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx1P48377 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx1P48377 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Rfx1P48377 Gm5385-201ENSMUST00000118988 1559 ntBASIC16.06■□□□□ 0.16
Rfx1P48377 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx1P48377 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC16.06■□□□□ 0.16
Rfx1P48377 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx1P48377 Gm33320-201ENSMUST00000192232 530 ntBASIC16.06■□□□□ 0.16
Rfx1P48377 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC16.06■□□□□ 0.16
Rfx1P48377 Gm43125-201ENSMUST00000201724 730 ntBASIC16.06■□□□□ 0.16
Rfx1P48377 AC154806.6-201ENSMUST00000228192 202 ntBASIC16.06■□□□□ 0.16
Rfx1P48377 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx1P48377 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Rfx1P48377 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Rfx1P48377 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx1P48377 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx1P48377 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx1P48377 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx1P48377 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx1P48377 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Rfx1P48377 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx1P48377 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx1P48377 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx1P48377 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx1P48377 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx1P48377 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx1P48377 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Rfx1P48377 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx1P48377 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx1P48377 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx1P48377 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Rfx1P48377 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC16.05■□□□□ 0.16
Rfx1P48377 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC16.05■□□□□ 0.16
Rfx1P48377 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC16.05■□□□□ 0.16
Rfx1P48377 Mir6990-201ENSMUST00000183724 91 ntBASIC16.05■□□□□ 0.16
Rfx1P48377 AC131997.1-201ENSMUST00000228611 1229 ntBASIC16.05■□□□□ 0.16
Rfx1P48377 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx1P48377 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Rfx1P48377 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx1P48377 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC16.05■□□□□ 0.16
Rfx1P48377 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx1P48377 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC16.05■□□□□ 0.16
Rfx1P48377 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx1P48377 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx1P48377 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx1P48377 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx1P48377 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx1P48377 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx1P48377 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx1P48377 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx1P48377 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx1P48377 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx1P48377 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Rfx1P48377 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx1P48377 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx1P48377 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx1P48377 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx1P48377 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx1P48377 Gm15460-201ENSMUST00000118147 391 ntBASIC16.04■□□□□ 0.16
Rfx1P48377 Mir1897-201ENSMUST00000122581 272 ntBASIC16.04■□□□□ 0.16
Rfx1P48377 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx1P48377 Gm5264-201ENSMUST00000190584 848 ntBASIC16.04■□□□□ 0.16
Rfx1P48377 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC16.04■□□□□ 0.16
Rfx1P48377 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC16.04■□□□□ 0.16
Rfx1P48377 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC16.04■□□□□ 0.16
Rfx1P48377 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx1P48377 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx1P48377 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx1P48377 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Rfx1P48377 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx1P48377 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx1P48377 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx1P48377 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx1P48377 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx1P48377 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx1P48377 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC16.04■□□□□ 0.16
Rfx1P48377 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx1P48377 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx1P48377 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx1P48377 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rfx1P48377 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC16.03■□□□□ 0.16
Rfx1P48377 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rfx1P48377 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rfx1P48377 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rfx1P48377 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rfx1P48377 Gm42863-201ENSMUST00000197875 2958 ntBASIC16.03■□□□□ 0.16
Rfx1P48377 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rfx1P48377 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Rfx1P48377 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rfx1P48377 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC16.03■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 46.4 ms