Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Chmp6P0C0A3 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Chmp6P0C0A3 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Chmp6P0C0A3 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Chmp6P0C0A3 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Chmp6P0C0A3 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Chmp6P0C0A3 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Chmp6P0C0A3 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC14.68□□□□□ -0.06
Chmp6P0C0A3 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Chmp6P0C0A3 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Chmp6P0C0A3 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Gm28631-201ENSMUST00000190740 334 ntBASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Gm37917-201ENSMUST00000194711 392 ntBASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chmp6P0C0A3 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC14.67□□□□□ -0.06
Chmp6P0C0A3 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Gm37015-201ENSMUST00000192763 1521 ntBASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Gm19220-201ENSMUST00000222682 803 ntBASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Gm38037-201ENSMUST00000192600 1624 ntBASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Gm37644-201ENSMUST00000192190 2270 ntBASIC14.66□□□□□ -0.06
Chmp6P0C0A3 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Chmp6P0C0A3 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Chmp6P0C0A3 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Chmp6P0C0A3 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Chmp6P0C0A3 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Chmp6P0C0A3 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Chmp6P0C0A3 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Chmp6P0C0A3 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Chmp6P0C0A3 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Chmp6P0C0A3 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Chmp6P0C0A3 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Chmp6P0C0A3 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Chmp6P0C0A3 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Chmp6P0C0A3 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Chmp6P0C0A3 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Chmp6P0C0A3 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC14.65□□□□□ -0.06
Chmp6P0C0A3 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC14.65□□□□□ -0.06
Chmp6P0C0A3 Gm5354-201ENSMUST00000182417 973 ntBASIC14.65□□□□□ -0.06
Chmp6P0C0A3 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC14.65□□□□□ -0.06
Chmp6P0C0A3 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC14.65□□□□□ -0.06
Chmp6P0C0A3 AC154687.2-201ENSMUST00000223853 640 ntBASIC14.65□□□□□ -0.06
Chmp6P0C0A3 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Chmp6P0C0A3 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Chmp6P0C0A3 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC14.65□□□□□ -0.06
Chmp6P0C0A3 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Chmp6P0C0A3 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 55.3 ms