Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hoxd3P09027 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC10.56□□□□□ -0.72
Hoxd3P09027 Gm3476-201ENSMUST00000112742 853 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.72
Hoxd3P09027 Gm15371-201ENSMUST00000117057 784 ntBASIC10.56□□□□□ -0.72
Hoxd3P09027 Gm15429-201ENSMUST00000151268 798 ntBASIC10.56□□□□□ -0.72
Hoxd3P09027 Gm8602-201ENSMUST00000184045 607 ntBASIC10.56□□□□□ -0.72
Hoxd3P09027 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hoxd3P09027 Gm43433-201ENSMUST00000196573 481 ntBASIC10.56□□□□□ -0.72
Hoxd3P09027 Gm32296-201ENSMUST00000220590 1057 ntTSL 3 BASIC10.56□□□□□ -0.72
Hoxd3P09027 AC125117.1-201ENSMUST00000228121 468 ntBASIC10.56□□□□□ -0.72
Hoxd3P09027 Ly96-201ENSMUST00000026881 632 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hoxd3P09027 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hoxd3P09027 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hoxd3P09027 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hoxd3P09027 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hoxd3P09027 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.72
Hoxd3P09027 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
Hoxd3P09027 Gm12020-201ENSMUST00000119030 2042 ntBASIC10.56□□□□□ -0.72
Hoxd3P09027 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hoxd3P09027 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hoxd3P09027 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hoxd3P09027 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hoxd3P09027 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC10.56□□□□□ -0.72
Hoxd3P09027 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hoxd3P09027 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hoxd3P09027 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hoxd3P09027 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC10.56□□□□□ -0.72
Hoxd3P09027 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hoxd3P09027 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hoxd3P09027 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hoxd3P09027 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Hoxd3P09027 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC10.56□□□□□ -0.72
Hoxd3P09027 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hoxd3P09027 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC10.55□□□□□ -0.72
Hoxd3P09027 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC10.55□□□□□ -0.72
Hoxd3P09027 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC10.55□□□□□ -0.72
Hoxd3P09027 Gm14127-201ENSMUST00000117906 678 ntBASIC10.55□□□□□ -0.72
Hoxd3P09027 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC10.55□□□□□ -0.72
Hoxd3P09027 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC10.55□□□□□ -0.72
Hoxd3P09027 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC10.55□□□□□ -0.72
Hoxd3P09027 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Gm29288-201ENSMUST00000191582 901 ntBASIC10.55□□□□□ -0.72
Hoxd3P09027 Gm40263-201ENSMUST00000197468 580 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Gm40332-201ENSMUST00000199847 938 ntBASIC10.55□□□□□ -0.72
Hoxd3P09027 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC10.55□□□□□ -0.72
Hoxd3P09027 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC10.55□□□□□ -0.72
Hoxd3P09027 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC10.55□□□□□ -0.72
Hoxd3P09027 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC10.55□□□□□ -0.72
Hoxd3P09027 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC10.55□□□□□ -0.72
Hoxd3P09027 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Hoxd3P09027 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC10.55□□□□□ -0.72
Hoxd3P09027 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC10.55□□□□□ -0.72
Hoxd3P09027 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC10.54□□□□□ -0.72
Hoxd3P09027 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC10.54□□□□□ -0.72
Hoxd3P09027 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC10.54□□□□□ -0.72
Hoxd3P09027 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC10.54□□□□□ -0.72
Hoxd3P09027 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Gm3676-201ENSMUST00000111869 899 ntAPPRIS P1 TSL 3 BASIC10.54□□□□□ -0.72
Hoxd3P09027 Gm15770-201ENSMUST00000117498 584 ntBASIC10.54□□□□□ -0.72
Hoxd3P09027 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC10.54□□□□□ -0.72
Hoxd3P09027 Gm12249-201ENSMUST00000132323 719 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC10.54□□□□□ -0.72
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms