Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Scn11aQ9R053 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Scn11aQ9R053 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Scn11aQ9R053 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Scn11aQ9R053 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Scn11aQ9R053 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
Scn11aQ9R053 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Scn11aQ9R053 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Scn11aQ9R053 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
Scn11aQ9R053 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Scn11aQ9R053 Gm8738-201ENSMUST00000172606 329 ntBASIC15.71■□□□□ 0.11
Scn11aQ9R053 Gm23363-201ENSMUST00000175024 79 ntBASIC15.71■□□□□ 0.11
Scn11aQ9R053 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Scn11aQ9R053 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Scn11aQ9R053 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC15.71■□□□□ 0.11
Scn11aQ9R053 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC15.71■□□□□ 0.11
Scn11aQ9R053 Ighv8-10-201ENSMUST00000199579 358 ntBASIC15.71■□□□□ 0.11
Scn11aQ9R053 Gm43298-201ENSMUST00000200887 866 ntTSL 3 BASIC15.71■□□□□ 0.11
Scn11aQ9R053 Gm8227-201ENSMUST00000223306 571 ntBASIC15.71■□□□□ 0.11
Scn11aQ9R053 AC122371.3-201ENSMUST00000223402 1061 ntBASIC15.71■□□□□ 0.11
Scn11aQ9R053 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Scn11aQ9R053 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC15.71■□□□□ 0.11
Scn11aQ9R053 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC15.71■□□□□ 0.11
Scn11aQ9R053 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Scn11aQ9R053 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Scn11aQ9R053 Gm44094-201ENSMUST00000204703 2030 ntBASIC15.71■□□□□ 0.11
Scn11aQ9R053 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
Scn11aQ9R053 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC15.71■□□□□ 0.1
Scn11aQ9R053 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
Scn11aQ9R053 AC154680.1-201ENSMUST00000224376 859 ntBASIC15.7■□□□□ 0.1
Scn11aQ9R053 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Scn11aQ9R053 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Scn11aQ9R053 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Gm10676-201ENSMUST00000098778 3221 ntBASIC15.7■□□□□ 0.1
Scn11aQ9R053 Gm5989-201ENSMUST00000096092 2077 ntBASIC15.7■□□□□ 0.1
Scn11aQ9R053 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Mir6927-201ENSMUST00000184494 71 ntBASIC15.7■□□□□ 0.1
Scn11aQ9R053 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Gm9004-201ENSMUST00000218739 1222 ntBASIC15.7■□□□□ 0.1
Scn11aQ9R053 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Scn11aQ9R053 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC15.69■□□□□ 0.1
Scn11aQ9R053 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Gm34767-201ENSMUST00000191813 1062 ntBASIC15.69■□□□□ 0.1
Scn11aQ9R053 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC15.69■□□□□ 0.1
Scn11aQ9R053 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn11aQ9R053 AC154262.2-201ENSMUST00000224310 2293 ntBASIC15.68■□□□□ 0.1
Scn11aQ9R053 Gm45242-201ENSMUST00000210666 2129 ntBASIC15.68■□□□□ 0.1
Scn11aQ9R053 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Scn11aQ9R053 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn11aQ9R053 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC15.68■□□□□ 0.1
Scn11aQ9R053 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms