Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn4aQ9ER60 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Scn4aQ9ER60 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn4aQ9ER60 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn4aQ9ER60 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn4aQ9ER60 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC17.87■□□□□ 0.45
Scn4aQ9ER60 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC17.87■□□□□ 0.45
Scn4aQ9ER60 Gm4726-201ENSMUST00000135604 736 ntBASIC17.87■□□□□ 0.45
Scn4aQ9ER60 Gm6019-201ENSMUST00000148369 736 ntBASIC17.87■□□□□ 0.45
Scn4aQ9ER60 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Scn4aQ9ER60 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn4aQ9ER60 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn4aQ9ER60 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn4aQ9ER60 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn4aQ9ER60 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn4aQ9ER60 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn4aQ9ER60 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn4aQ9ER60 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn4aQ9ER60 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn4aQ9ER60 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn4aQ9ER60 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Gm6992-201ENSMUST00000217973 1607 ntBASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Gm8494-201ENSMUST00000178171 1233 ntBASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Mir8115-201ENSMUST00000184992 119 ntBASIC17.86■□□□□ 0.45
Scn4aQ9ER60 AC165260.3-202ENSMUST00000224550 1031 ntBASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Gm5434-202ENSMUST00000222384 1451 ntBASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Gm5434-201ENSMUST00000071825 1451 ntBASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Gm23596-201ENSMUST00000104304 132 ntBASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Scn4aQ9ER60 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Gm18059-201ENSMUST00000208073 580 ntBASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Gm44981-201ENSMUST00000205549 1943 ntBASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Scn4aQ9ER60 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC17.86■□□□□ 0.45
Scn4aQ9ER60 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn4aQ9ER60 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn4aQ9ER60 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Scn4aQ9ER60 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn4aQ9ER60 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC17.85■□□□□ 0.45
Scn4aQ9ER60 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn4aQ9ER60 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Scn4aQ9ER60 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Scn4aQ9ER60 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC17.85■□□□□ 0.45
Scn4aQ9ER60 Marcksl1-ps4-201ENSMUST00000132531 291 ntBASIC17.85■□□□□ 0.45
Scn4aQ9ER60 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
Scn4aQ9ER60 Gm6652-201ENSMUST00000186414 1070 ntBASIC17.85■□□□□ 0.45
Scn4aQ9ER60 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC17.85■□□□□ 0.45
Scn4aQ9ER60 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn4aQ9ER60 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC17.85■□□□□ 0.45
Scn4aQ9ER60 n-R5s211-201ENSMUST00000093689 119 ntBASIC17.85■□□□□ 0.45
Scn4aQ9ER60 AC123619.2-202ENSMUST00000225097 1568 ntBASIC17.85■□□□□ 0.45
Scn4aQ9ER60 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn4aQ9ER60 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC17.85■□□□□ 0.45
Scn4aQ9ER60 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn4aQ9ER60 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn4aQ9ER60 Gm15784-201ENSMUST00000120260 1462 ntBASIC17.85■□□□□ 0.45
Scn4aQ9ER60 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn4aQ9ER60 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn4aQ9ER60 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Rpl4-201ENSMUST00000034966 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Ighv7-2-201ENSMUST00000103462 354 ntAPPRIS ALT2 BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Gm14644-201ENSMUST00000116671 647 ntBASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Gm1848-201ENSMUST00000120711 789 ntBASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Igf1-205ENSMUST00000121952 798 ntTSL 3 BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 2010109P13Rik-201ENSMUST00000204605 392 ntBASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Gm18463-201ENSMUST00000207258 474 ntBASIC17.84■□□□□ 0.45
Scn4aQ9ER60 CT010486.3-201ENSMUST00000224555 811 ntBASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Gm13315-201ENSMUST00000120376 991 ntBASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Tmem40-206ENSMUST00000170625 843 ntAPPRIS ALT2 TSL 3 BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 4930535L15Rik-201ENSMUST00000175891 536 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 62.2 ms