Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Gm2639-201ENSMUST00000156881 1297 ntBASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Gm5370-201ENSMUST00000187187 574 ntBASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Gm29705-201ENSMUST00000212598 474 ntBASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 AC155237.1-201ENSMUST00000226196 1279 ntBASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sf3b1Q99NB9 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Gm12203-201ENSMUST00000118235 598 ntBASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Gm12209-201ENSMUST00000120089 596 ntBASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Gm8565-201ENSMUST00000183259 1014 ntBASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Gm42693-201ENSMUST00000196779 631 ntBASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Gm45331-201ENSMUST00000209868 554 ntBASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Sf3b1Q99NB9 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC14.27□□□□□ -0.13
Sf3b1Q99NB9 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sf3b1Q99NB9 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sf3b1Q99NB9 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sf3b1Q99NB9 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC14.27□□□□□ -0.13
Sf3b1Q99NB9 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Sf3b1Q99NB9 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Sf3b1Q99NB9 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC14.27□□□□□ -0.13
Sf3b1Q99NB9 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Sf3b1Q99NB9 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sf3b1Q99NB9 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC14.27□□□□□ -0.13
Sf3b1Q99NB9 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 Gm11405-201ENSMUST00000118689 1556 ntBASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 Gm16177-201ENSMUST00000120728 718 ntBASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 Gm11400-201ENSMUST00000120853 1214 ntBASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sf3b1Q99NB9 Dctn4-202ENSMUST00000223590 1530 ntBASIC14.26□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 59.4 ms