Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc28aQ8CEI3 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc28aQ8CEI3 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc28aQ8CEI3 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc28aQ8CEI3 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc28aQ8CEI3 Gm15678-201ENSMUST00000117573 960 ntBASIC14.23□□□□□ -0.13
Ccdc28aQ8CEI3 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC14.23□□□□□ -0.13
Ccdc28aQ8CEI3 Gm4804-201ENSMUST00000182234 999 ntBASIC14.23□□□□□ -0.13
Ccdc28aQ8CEI3 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC14.23□□□□□ -0.13
Ccdc28aQ8CEI3 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc28aQ8CEI3 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc28aQ8CEI3 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc28aQ8CEI3 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Ccdc28aQ8CEI3 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC14.23□□□□□ -0.13
Ccdc28aQ8CEI3 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc28aQ8CEI3 AC168058.1-201ENSMUST00000219521 2282 ntBASIC14.23□□□□□ -0.13
Ccdc28aQ8CEI3 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc28aQ8CEI3 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc28aQ8CEI3 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Ccdc28aQ8CEI3 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc28aQ8CEI3 Gm10176-201ENSMUST00000159707 2264 ntBASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Gm5385-201ENSMUST00000118988 1559 ntBASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc28aQ8CEI3 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Gm15770-201ENSMUST00000117498 584 ntBASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Mir1897-201ENSMUST00000122581 272 ntBASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Gm24420-201ENSMUST00000176676 59 ntBASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Gm8000-201ENSMUST00000188378 592 ntBASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Gm43474-201ENSMUST00000196415 774 ntBASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Gm44335-201ENSMUST00000196879 141 ntBASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Gm44297-201ENSMUST00000198304 141 ntBASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Gm44346-201ENSMUST00000198851 141 ntBASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Gm5425-201ENSMUST00000214125 459 ntBASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc28aQ8CEI3 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ccdc28aQ8CEI3 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ccdc28aQ8CEI3 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Ccdc28aQ8CEI3 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
Ccdc28aQ8CEI3 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC14.21□□□□□ -0.14
Ccdc28aQ8CEI3 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
Ccdc28aQ8CEI3 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ccdc28aQ8CEI3 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms