Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC12.24□□□□□ -0.45
Usf1Q61069 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Usf1Q61069 AC022775.2-201ENSMUST00000227885 646 ntBASIC12.24□□□□□ -0.45
Usf1Q61069 CT025533.2-201ENSMUST00000228715 1248 ntBASIC12.24□□□□□ -0.45
Usf1Q61069 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usf1Q61069 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usf1Q61069 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usf1Q61069 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usf1Q61069 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usf1Q61069 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usf1Q61069 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Usf1Q61069 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usf1Q61069 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Usf1Q61069 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usf1Q61069 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Usf1Q61069 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usf1Q61069 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usf1Q61069 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Usf1Q61069 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Usf1Q61069 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC12.24□□□□□ -0.45
Usf1Q61069 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC12.23□□□□□ -0.45
Usf1Q61069 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Usf1Q61069 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
Usf1Q61069 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Gm11222-201ENSMUST00000119005 738 ntBASIC12.23□□□□□ -0.45
Usf1Q61069 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC12.23□□□□□ -0.45
Usf1Q61069 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Gm3890-201ENSMUST00000182416 207 ntBASIC12.23□□□□□ -0.45
Usf1Q61069 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC12.23□□□□□ -0.45
Usf1Q61069 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC12.23□□□□□ -0.45
Usf1Q61069 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 AC122371.3-201ENSMUST00000223402 1061 ntBASIC12.23□□□□□ -0.45
Usf1Q61069 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Gm44981-201ENSMUST00000205549 1943 ntBASIC12.23□□□□□ -0.45
Usf1Q61069 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Usf1Q61069 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Gm45760-201ENSMUST00000212190 1782 ntBASIC12.23□□□□□ -0.45
Usf1Q61069 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Usf1Q61069 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC12.23□□□□□ -0.45
Usf1Q61069 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Usf1Q61069 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Gm6015-201ENSMUST00000217493 1586 ntBASIC12.22□□□□□ -0.45
Usf1Q61069 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Gm43289-201ENSMUST00000200537 1475 ntBASIC12.22□□□□□ -0.45
Usf1Q61069 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC12.22□□□□□ -0.45
Usf1Q61069 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Gm45133-201ENSMUST00000207548 2773 ntBASIC12.22□□□□□ -0.45
Usf1Q61069 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC12.22□□□□□ -0.45
Usf1Q61069 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Gm11964-201ENSMUST00000120982 444 ntBASIC12.22□□□□□ -0.45
Usf1Q61069 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC12.22□□□□□ -0.45
Usf1Q61069 Gm26185-201ENSMUST00000157692 266 ntBASIC12.22□□□□□ -0.45
Usf1Q61069 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC12.22□□□□□ -0.45
Usf1Q61069 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC12.22□□□□□ -0.45
Usf1Q61069 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Usf1Q61069 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC12.22□□□□□ -0.45
Usf1Q61069 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC12.22□□□□□ -0.45
Usf1Q61069 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Usf1Q61069 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC12.22□□□□□ -0.45
Usf1Q61069 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Usf1Q61069 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Gm19163-201ENSMUST00000223313 780 ntBASIC12.22□□□□□ -0.45
Usf1Q61069 Morn2-202ENSMUST00000227729 656 ntBASIC12.22□□□□□ -0.45
Usf1Q61069 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Usf1Q61069 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 74.1 ms