Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm18018-201ENSMUST00000198273 408 ntBASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Upf3bQ3ULL6 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Upf3bQ3ULL6 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Upf3bQ3ULL6 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Upf3bQ3ULL6 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
Upf3bQ3ULL6 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Upf3bQ3ULL6 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Upf3bQ3ULL6 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Upf3bQ3ULL6 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Upf3bQ3ULL6 Gm17870-201ENSMUST00000219489 1174 ntBASIC14.43□□□□□ -0.1
Upf3bQ3ULL6 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
Upf3bQ3ULL6 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Upf3bQ3ULL6 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Upf3bQ3ULL6 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Upf3bQ3ULL6 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Upf3bQ3ULL6 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Upf3bQ3ULL6 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Upf3bQ3ULL6 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Upf3bQ3ULL6 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Upf3bQ3ULL6 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Gm13886-201ENSMUST00000117876 1183 ntBASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Gm12537-201ENSMUST00000119266 1002 ntBASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Gm12070-201ENSMUST00000119551 1002 ntBASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Gm12671-201ENSMUST00000119978 1002 ntBASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Gm13292-201ENSMUST00000120014 1000 ntBASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Gm14928-201ENSMUST00000120198 477 ntBASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Gm12403-201ENSMUST00000121384 959 ntBASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Gm10359-201ENSMUST00000180167 1002 ntBASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Gm12033-201ENSMUST00000180654 1002 ntBASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Gm5559-201ENSMUST00000180755 1002 ntBASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Gm4335-201ENSMUST00000182581 1004 ntBASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Upf3bQ3ULL6 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Upf3bQ3ULL6 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Upf3bQ3ULL6 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Upf3bQ3ULL6 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Upf3bQ3ULL6 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Upf3bQ3ULL6 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC14.41□□□□□ -0.1
Upf3bQ3ULL6 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Upf3bQ3ULL6 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Upf3bQ3ULL6 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Upf3bQ3ULL6 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Upf3bQ3ULL6 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
Upf3bQ3ULL6 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Upf3bQ3ULL6 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC14.41□□□□□ -0.1
Upf3bQ3ULL6 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Upf3bQ3ULL6 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Upf3bQ3ULL6 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC14.41□□□□□ -0.1
Upf3bQ3ULL6 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC14.41□□□□□ -0.1
Upf3bQ3ULL6 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Upf3bQ3ULL6 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC14.41□□□□□ -0.1
Upf3bQ3ULL6 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Upf3bQ3ULL6 Gm38144-201ENSMUST00000192790 465 ntBASIC14.41□□□□□ -0.1
Upf3bQ3ULL6 Gm42550-201ENSMUST00000201553 960 ntBASIC14.41□□□□□ -0.1
Upf3bQ3ULL6 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Upf3bQ3ULL6 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC14.41□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms