Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Limch1Q3UH68 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Limch1Q3UH68 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Limch1Q3UH68 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Limch1Q3UH68 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Limch1Q3UH68 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC15.89■□□□□ 0.13
Limch1Q3UH68 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Limch1Q3UH68 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Limch1Q3UH68 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Gm8131-201ENSMUST00000213783 1570 ntBASIC15.88■□□□□ 0.13
Limch1Q3UH68 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Gm13859-201ENSMUST00000119936 1423 ntBASIC15.88■□□□□ 0.13
Limch1Q3UH68 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Gm9002-201ENSMUST00000178437 499 ntBASIC15.88■□□□□ 0.13
Limch1Q3UH68 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC15.88■□□□□ 0.13
Limch1Q3UH68 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Limch1Q3UH68 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Limch1Q3UH68 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Limch1Q3UH68 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Limch1Q3UH68 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Limch1Q3UH68 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Limch1Q3UH68 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
Limch1Q3UH68 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Limch1Q3UH68 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Limch1Q3UH68 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Limch1Q3UH68 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Limch1Q3UH68 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Limch1Q3UH68 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Limch1Q3UH68 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Limch1Q3UH68 Gm15240-201ENSMUST00000118156 720 ntBASIC15.87■□□□□ 0.13
Limch1Q3UH68 Gm12960-201ENSMUST00000120017 1066 ntBASIC15.87■□□□□ 0.13
Limch1Q3UH68 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Limch1Q3UH68 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Limch1Q3UH68 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC15.87■□□□□ 0.13
Limch1Q3UH68 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC15.87■□□□□ 0.13
Limch1Q3UH68 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC15.87■□□□□ 0.13
Limch1Q3UH68 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Limch1Q3UH68 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Limch1Q3UH68 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
Limch1Q3UH68 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Limch1Q3UH68 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Limch1Q3UH68 Gm28386-201ENSMUST00000189147 1849 ntBASIC15.87■□□□□ 0.13
Limch1Q3UH68 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC15.87■□□□□ 0.13
Limch1Q3UH68 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Limch1Q3UH68 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Limch1Q3UH68 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Limch1Q3UH68 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Limch1Q3UH68 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Limch1Q3UH68 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Limch1Q3UH68 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Limch1Q3UH68 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Limch1Q3UH68 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Limch1Q3UH68 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Limch1Q3UH68 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Limch1Q3UH68 Gm20632-201ENSMUST00000176760 2427 ntBASIC15.86■□□□□ 0.13
Limch1Q3UH68 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Limch1Q3UH68 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Limch1Q3UH68 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Limch1Q3UH68 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Limch1Q3UH68 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Limch1Q3UH68 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Limch1Q3UH68 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Limch1Q3UH68 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Limch1Q3UH68 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Limch1Q3UH68 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Limch1Q3UH68 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Limch1Q3UH68 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
Limch1Q3UH68 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC15.86■□□□□ 0.13
Limch1Q3UH68 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
Limch1Q3UH68 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
Limch1Q3UH68 AC162801.1-201ENSMUST00000220612 198 ntBASIC15.86■□□□□ 0.13
Limch1Q3UH68 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Limch1Q3UH68 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 51.2 ms