Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC14.05□□□□□ -0.16
Rnf40Q3U319 2410003L11Rik-202ENSMUST00000145262 642 ntTSL 3 BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Gm25026-201ENSMUST00000175017 188 ntBASIC14.05□□□□□ -0.16
Rnf40Q3U319 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC14.05□□□□□ -0.16
Rnf40Q3U319 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC14.05□□□□□ -0.16
Rnf40Q3U319 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 AC154846.1-201ENSMUST00000226278 862 ntBASIC14.05□□□□□ -0.16
Rnf40Q3U319 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Gm45643-201ENSMUST00000211364 1484 ntBASIC14.05□□□□□ -0.16
Rnf40Q3U319 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC14.05□□□□□ -0.16
Rnf40Q3U319 CT025624.1-201ENSMUST00000224007 2700 ntBASIC14.05□□□□□ -0.16
Rnf40Q3U319 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rnf40Q3U319 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Gm44401-201ENSMUST00000204462 2375 ntBASIC14.04□□□□□ -0.16
Rnf40Q3U319 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Gm17807-201ENSMUST00000186869 298 ntBASIC14.04□□□□□ -0.16
Rnf40Q3U319 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Gm44719-201ENSMUST00000206404 149 ntBASIC14.04□□□□□ -0.16
Rnf40Q3U319 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
Rnf40Q3U319 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Gm14452-201ENSMUST00000118680 1632 ntBASIC14.04□□□□□ -0.16
Rnf40Q3U319 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rnf40Q3U319 Gm8337-201ENSMUST00000187358 1938 ntBASIC14.03□□□□□ -0.16
Rnf40Q3U319 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC14.03□□□□□ -0.16
Rnf40Q3U319 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC14.03□□□□□ -0.16
Rnf40Q3U319 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC14.03□□□□□ -0.16
Rnf40Q3U319 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC14.03□□□□□ -0.16
Rnf40Q3U319 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 A330048O09Rik-201ENSMUST00000180777 672 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Gm45610-201ENSMUST00000209227 784 ntBASIC14.03□□□□□ -0.16
Rnf40Q3U319 5930422O12Rik-201ENSMUST00000059351 840 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Rnf40Q3U319 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC14.03□□□□□ -0.16
Rnf40Q3U319 Gm10154-201ENSMUST00000084445 354 ntBASIC14.03□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 48.7 ms