Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col18a1P39061 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col18a1P39061 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col18a1P39061 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC17.44■□□□□ 0.38
Col18a1P39061 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC17.43■□□□□ 0.38
Col18a1P39061 Mir1901-201ENSMUST00000122616 78 ntBASIC17.43■□□□□ 0.38
Col18a1P39061 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col18a1P39061 AC174797.2-202ENSMUST00000225729 568 ntBASIC17.43■□□□□ 0.38
Col18a1P39061 Gm4950-201ENSMUST00000091905 618 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Col18a1P39061 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col18a1P39061 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col18a1P39061 Gm21998-201ENSMUST00000117552 1308 ntBASIC17.43■□□□□ 0.38
Col18a1P39061 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col18a1P39061 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col18a1P39061 Dclk1-215ENSMUST00000200352 1662 ntTSL 2 BASIC17.43■□□□□ 0.38
Col18a1P39061 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col18a1P39061 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC17.43■□□□□ 0.38
Col18a1P39061 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Col18a1P39061 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Col18a1P39061 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC17.43■□□□□ 0.38
Col18a1P39061 Gm43823-201ENSMUST00000197391 1808 ntBASIC17.43■□□□□ 0.38
Col18a1P39061 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col18a1P39061 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col18a1P39061 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col18a1P39061 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC17.43■□□□□ 0.38
Col18a1P39061 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC17.43■□□□□ 0.38
Col18a1P39061 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC17.43■□□□□ 0.38
Col18a1P39061 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
Col18a1P39061 Gm29187-201ENSMUST00000186681 689 ntTSL 3 BASIC17.43■□□□□ 0.38
Col18a1P39061 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC17.43■□□□□ 0.38
Col18a1P39061 Gm270-201ENSMUST00000223010 976 ntBASIC17.43■□□□□ 0.38
Col18a1P39061 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col18a1P39061 AC169511.2-201ENSMUST00000226674 2063 ntBASIC17.43■□□□□ 0.38
Col18a1P39061 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Col18a1P39061 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col18a1P39061 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC17.42■□□□□ 0.38
Col18a1P39061 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
Col18a1P39061 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col18a1P39061 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Col18a1P39061 Gm12501-201ENSMUST00000119163 529 ntBASIC17.42■□□□□ 0.38
Col18a1P39061 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC17.42■□□□□ 0.38
Col18a1P39061 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Col18a1P39061 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC17.42■□□□□ 0.38
Col18a1P39061 Rsph14-206ENSMUST00000166088 1203 ntAPPRIS P4 TSL 5 BASIC17.42■□□□□ 0.38
Col18a1P39061 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col18a1P39061 Rsph14-207ENSMUST00000179546 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col18a1P39061 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Col18a1P39061 Gm9358-201ENSMUST00000183067 927 ntBASIC17.42■□□□□ 0.38
Col18a1P39061 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Col18a1P39061 Sstr2-201ENSMUST00000067591 1041 ntTSL 2 BASIC17.42■□□□□ 0.38
Col18a1P39061 Rsph14-201ENSMUST00000009214 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col18a1P39061 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Col18a1P39061 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col18a1P39061 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col18a1P39061 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col18a1P39061 Cela3b-201ENSMUST00000102522 926 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col18a1P39061 Gm12314-201ENSMUST00000118104 538 ntBASIC17.41■□□□□ 0.38
Col18a1P39061 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col18a1P39061 Gm18038-201ENSMUST00000197900 485 ntBASIC17.41■□□□□ 0.38
Col18a1P39061 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col18a1P39061 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC17.41■□□□□ 0.38
Col18a1P39061 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col18a1P39061 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Col18a1P39061 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Col18a1P39061 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Col18a1P39061 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col18a1P39061 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col18a1P39061 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Col18a1P39061 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col18a1P39061 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col18a1P39061 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col18a1P39061 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col18a1P39061 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col18a1P39061 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Col18a1P39061 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Col18a1P39061 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC17.4■□□□□ 0.38
Col18a1P39061 Gm11892-201ENSMUST00000117711 1202 ntBASIC17.4■□□□□ 0.38
Col18a1P39061 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Col18a1P39061 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col18a1P39061 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Col18a1P39061 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC17.4■□□□□ 0.38
Col18a1P39061 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
Col18a1P39061 AC153505.1-201ENSMUST00000218819 1071 ntBASIC17.4■□□□□ 0.38
Col18a1P39061 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC17.4■□□□□ 0.38
Col18a1P39061 AC133602.1-201ENSMUST00000227510 509 ntBASIC17.4■□□□□ 0.38
Col18a1P39061 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC17.4■□□□□ 0.38
Col18a1P39061 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Col18a1P39061 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col18a1P39061 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col18a1P39061 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Col18a1P39061 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Col18a1P39061 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col18a1P39061 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col18a1P39061 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col18a1P39061 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
Col18a1P39061 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col18a1P39061 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col18a1P39061 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col18a1P39061 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col18a1P39061 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 55.6 ms