Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx28Q9CWT6 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Gm37171-201ENSMUST00000192636 1185 ntBASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 AC140397.2-201ENSMUST00000224213 834 ntBASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx28Q9CWT6 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 AC164426.2-201ENSMUST00000225993 2492 ntBASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Gm15693-201ENSMUST00000120470 637 ntBASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx28Q9CWT6 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx28Q9CWT6 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC12.67□□□□□ -0.38
Ddx28Q9CWT6 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx28Q9CWT6 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx28Q9CWT6 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx28Q9CWT6 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx28Q9CWT6 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx28Q9CWT6 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx28Q9CWT6 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx28Q9CWT6 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Ddx28Q9CWT6 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx28Q9CWT6 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx28Q9CWT6 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Ddx28Q9CWT6 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Ddx28Q9CWT6 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Ddx28Q9CWT6 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC12.67□□□□□ -0.38
Ddx28Q9CWT6 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC12.67□□□□□ -0.38
Ddx28Q9CWT6 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx28Q9CWT6 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx28Q9CWT6 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx28Q9CWT6 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC12.67□□□□□ -0.38
Ddx28Q9CWT6 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC12.67□□□□□ -0.38
Ddx28Q9CWT6 Gm7774-201ENSMUST00000200064 533 ntBASIC12.67□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms