Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 AC154687.2-201ENSMUST00000223853 640 ntBASIC15.15■□□□□ 0.02
Smc1aQ9CU62 AC149294.4-201ENSMUST00000227870 882 ntBASIC15.15■□□□□ 0.02
Smc1aQ9CU62 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Smc1aQ9CU62 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Smc1aQ9CU62 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Smc1aQ9CU62 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Smc1aQ9CU62 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Smc1aQ9CU62 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Smc1aQ9CU62 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Smc1aQ9CU62 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Smc1aQ9CU62 AC164107.1-201ENSMUST00000227730 2161 ntBASIC15.15■□□□□ 0.02
Smc1aQ9CU62 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Smc1aQ9CU62 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Smc1aQ9CU62 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Smc1aQ9CU62 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Smc1aQ9CU62 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Smc1aQ9CU62 AC139054.1-201ENSMUST00000226898 1598 ntBASIC15.15■□□□□ 0.02
Smc1aQ9CU62 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Smc1aQ9CU62 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Gm11918-201ENSMUST00000121660 179 ntBASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Gm8602-201ENSMUST00000184045 607 ntBASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Gm42748-201ENSMUST00000199354 2341 ntBASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Smc1aQ9CU62 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Smc1aQ9CU62 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms