Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Matn2-206ENSMUST00000228570 2798 ntBASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Gm12384-201ENSMUST00000119228 919 ntBASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Gm12537-201ENSMUST00000119266 1002 ntBASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Gm12070-201ENSMUST00000119551 1002 ntBASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Gm12671-201ENSMUST00000119978 1002 ntBASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Gm13292-201ENSMUST00000120014 1000 ntBASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Gm12403-201ENSMUST00000121384 959 ntBASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Gm10359-201ENSMUST00000180167 1002 ntBASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Gm12033-201ENSMUST00000180654 1002 ntBASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Gm5559-201ENSMUST00000180755 1002 ntBASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Gm4335-201ENSMUST00000182581 1004 ntBASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 AC126253.1-201ENSMUST00000227974 824 ntBASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Gm10478-201ENSMUST00000084451 396 ntBASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 CT025610.1-201ENSMUST00000224552 1786 ntBASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Gm43056-201ENSMUST00000197865 2791 ntBASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Gm38197-201ENSMUST00000192320 2122 ntBASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Gm7553-201ENSMUST00000185805 1426 ntBASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sf3b1Q99NB9 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Gm27331-201ENSMUST00000183705 60 ntBASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sf3b1Q99NB9 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 49.8 ms