Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
Brf1Q8CFK2 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Brf1Q8CFK2 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Brf1Q8CFK2 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Brf1Q8CFK2 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Brf1Q8CFK2 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Brf1Q8CFK2 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Brf1Q8CFK2 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Brf1Q8CFK2 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC16.31■□□□□ 0.2
Brf1Q8CFK2 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Brf1Q8CFK2 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC16.31■□□□□ 0.2
Brf1Q8CFK2 Mir7654-201ENSMUST00000185082 70 ntBASIC16.31■□□□□ 0.2
Brf1Q8CFK2 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC16.31■□□□□ 0.2
Brf1Q8CFK2 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Brf1Q8CFK2 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC16.31■□□□□ 0.2
Brf1Q8CFK2 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Brf1Q8CFK2 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Brf1Q8CFK2 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Brf1Q8CFK2 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Brf1Q8CFK2 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Brf1Q8CFK2 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Brf1Q8CFK2 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Brf1Q8CFK2 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Brf1Q8CFK2 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC16.3■□□□□ 0.2
Brf1Q8CFK2 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Brf1Q8CFK2 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Brf1Q8CFK2 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
Brf1Q8CFK2 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Brf1Q8CFK2 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC16.3■□□□□ 0.2
Brf1Q8CFK2 Gm4782-201ENSMUST00000168705 2046 ntBASIC16.3■□□□□ 0.2
Brf1Q8CFK2 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Brf1Q8CFK2 Gm37691-201ENSMUST00000192147 2573 ntBASIC16.3■□□□□ 0.2
Brf1Q8CFK2 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Brf1Q8CFK2 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Brf1Q8CFK2 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Brf1Q8CFK2 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
Brf1Q8CFK2 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Brf1Q8CFK2 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Brf1Q8CFK2 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Brf1Q8CFK2 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Brf1Q8CFK2 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Brf1Q8CFK2 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Brf1Q8CFK2 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Brf1Q8CFK2 Gm18244-201ENSMUST00000219747 1566 ntBASIC16.3■□□□□ 0.2
Brf1Q8CFK2 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Brf1Q8CFK2 Tmed9-203ENSMUST00000224741 1450 ntBASIC16.29■□□□□ 0.2
Brf1Q8CFK2 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Brf1Q8CFK2 CT030684.3-201ENSMUST00000227308 2445 ntBASIC16.29■□□□□ 0.2
Brf1Q8CFK2 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Brf1Q8CFK2 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Brf1Q8CFK2 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Brf1Q8CFK2 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Brf1Q8CFK2 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Brf1Q8CFK2 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Brf1Q8CFK2 Gm15678-201ENSMUST00000117573 960 ntBASIC16.29■□□□□ 0.2
Brf1Q8CFK2 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Brf1Q8CFK2 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC16.29■□□□□ 0.2
Brf1Q8CFK2 AC073947.2-201ENSMUST00000215888 1130 ntBASIC16.29■□□□□ 0.2
Brf1Q8CFK2 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Brf1Q8CFK2 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Brf1Q8CFK2 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Brf1Q8CFK2 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Brf1Q8CFK2 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Brf1Q8CFK2 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Brf1Q8CFK2 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Gm8775-201ENSMUST00000170943 1327 ntBASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Gm14928-201ENSMUST00000120198 477 ntBASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Brf1Q8CFK2 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms