Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Usp40Q8BWR4 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp40Q8BWR4 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp40Q8BWR4 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp40Q8BWR4 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp40Q8BWR4 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp40Q8BWR4 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp40Q8BWR4 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp40Q8BWR4 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usp40Q8BWR4 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Usp40Q8BWR4 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 AC167013.2-201ENSMUST00000228520 2684 ntBASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Gm11591-201ENSMUST00000120063 702 ntBASIC18.42■□□□□ 0.54
Usp40Q8BWR4 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Gm7172-201ENSMUST00000218047 1152 ntBASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Gm43579-201ENSMUST00000202387 1307 ntBASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Usp40Q8BWR4 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp40Q8BWR4 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp40Q8BWR4 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp40Q8BWR4 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Usp40Q8BWR4 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp40Q8BWR4 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp40Q8BWR4 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC18.41■□□□□ 0.54
Usp40Q8BWR4 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Usp40Q8BWR4 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC18.41■□□□□ 0.54
Usp40Q8BWR4 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC18.41■□□□□ 0.54
Usp40Q8BWR4 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC18.41■□□□□ 0.54
Usp40Q8BWR4 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC18.41■□□□□ 0.54
Usp40Q8BWR4 AC154462.2-201ENSMUST00000227519 370 ntBASIC18.41■□□□□ 0.54
Usp40Q8BWR4 Rassf8-202ENSMUST00000058538 1131 ntBASIC18.41■□□□□ 0.54
Usp40Q8BWR4 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC18.41■□□□□ 0.54
Usp40Q8BWR4 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp40Q8BWR4 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp40Q8BWR4 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Usp40Q8BWR4 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Usp40Q8BWR4 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC18.41■□□□□ 0.54
Usp40Q8BWR4 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp40Q8BWR4 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Usp40Q8BWR4 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC18.41■□□□□ 0.54
Usp40Q8BWR4 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC18.41■□□□□ 0.54
Usp40Q8BWR4 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usp40Q8BWR4 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp40Q8BWR4 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC18.4■□□□□ 0.54
Usp40Q8BWR4 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp40Q8BWR4 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp40Q8BWR4 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp40Q8BWR4 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp40Q8BWR4 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp40Q8BWR4 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Usp40Q8BWR4 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
Usp40Q8BWR4 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC18.4■□□□□ 0.54
Usp40Q8BWR4 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp40Q8BWR4 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Usp40Q8BWR4 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC18.4■□□□□ 0.54
Usp40Q8BWR4 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC18.4■□□□□ 0.54
Usp40Q8BWR4 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Usp40Q8BWR4 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp40Q8BWR4 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp40Q8BWR4 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp40Q8BWR4 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Usp40Q8BWR4 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usp40Q8BWR4 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Usp40Q8BWR4 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Usp40Q8BWR4 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Usp40Q8BWR4 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC18.39■□□□□ 0.53
Usp40Q8BWR4 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC18.39■□□□□ 0.53
Usp40Q8BWR4 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Usp40Q8BWR4 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Usp40Q8BWR4 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC18.39■□□□□ 0.53
Usp40Q8BWR4 Gm11637-201ENSMUST00000120601 592 ntBASIC18.39■□□□□ 0.53
Usp40Q8BWR4 Gm12363-201ENSMUST00000122250 668 ntBASIC18.39■□□□□ 0.53
Usp40Q8BWR4 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Usp40Q8BWR4 Gm28693-202ENSMUST00000190758 331 ntBASIC18.39■□□□□ 0.53
Usp40Q8BWR4 Gm38158-201ENSMUST00000194617 339 ntBASIC18.39■□□□□ 0.53
Usp40Q8BWR4 Gm42627-201ENSMUST00000197347 224 ntBASIC18.39■□□□□ 0.53
Usp40Q8BWR4 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Usp40Q8BWR4 n-R5s195-201ENSMUST00000082891 119 ntBASIC18.39■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 46.4 ms