Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Gm16202-201ENSMUST00000117532 544 ntBASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Gm8805-201ENSMUST00000117848 313 ntBASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Gm13786-201ENSMUST00000122371 333 ntBASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Gm6222-202ENSMUST00000182143 629 ntBASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Gm4857-201ENSMUST00000192718 785 ntBASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Gm38341-201ENSMUST00000195357 515 ntBASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 AC148324.1-201ENSMUST00000219034 4240 ntBASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3aQ3ULJ3 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Gm6203-201ENSMUST00000209575 1342 ntBASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 AC096628.2-201ENSMUST00000225443 1413 ntBASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Gm29396-201ENSMUST00000185659 716 ntBASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Gm45865-201ENSMUST00000211815 945 ntBASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 n-R5s195-201ENSMUST00000082891 119 ntBASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC14.16□□□□□ -0.14
Upf3aQ3ULJ3 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Mmp14-206ENSMUST00000225641 3238 ntBASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Gm15236-201ENSMUST00000117309 379 ntBASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Gm12241-201ENSMUST00000118330 726 ntBASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Gm38158-201ENSMUST00000194617 339 ntBASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Gm12500-202ENSMUST00000186471 2428 ntBASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Gm38197-201ENSMUST00000192320 2122 ntBASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Upf3aQ3ULJ3 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 165.8 ms