Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col6a1Q04857 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col6a1Q04857 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
Col6a1Q04857 Gm42471-201ENSMUST00000201457 1865 ntBASIC14.91□□□□□ -0.02
Col6a1Q04857 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col6a1Q04857 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col6a1Q04857 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col6a1Q04857 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col6a1Q04857 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col6a1Q04857 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col6a1Q04857 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC14.9□□□□□ -0.02
Col6a1Q04857 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col6a1Q04857 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col6a1Q04857 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col6a1Q04857 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC14.9□□□□□ -0.02
Col6a1Q04857 Gm24255-201ENSMUST00000104481 128 ntBASIC14.9□□□□□ -0.02
Col6a1Q04857 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC14.9□□□□□ -0.02
Col6a1Q04857 Gm12997-201ENSMUST00000120207 640 ntBASIC14.9□□□□□ -0.02
Col6a1Q04857 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col6a1Q04857 Gm42791-202ENSMUST00000147473 727 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Col6a1Q04857 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col6a1Q04857 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col6a1Q04857 Dleu2-205ENSMUST00000182325 463 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col6a1Q04857 Dleu2-212ENSMUST00000183079 535 ntTSL 3 BASIC14.9□□□□□ -0.02
Col6a1Q04857 Gm27320-201ENSMUST00000184892 109 ntBASIC14.9□□□□□ -0.02
Col6a1Q04857 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC14.9□□□□□ -0.02
Col6a1Q04857 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC14.9□□□□□ -0.02
Col6a1Q04857 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col6a1Q04857 Gm10268-201ENSMUST00000085340 555 ntBASIC14.9□□□□□ -0.02
Col6a1Q04857 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC14.9□□□□□ -0.02
Col6a1Q04857 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col6a1Q04857 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col6a1Q04857 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col6a1Q04857 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col6a1Q04857 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col6a1Q04857 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col6a1Q04857 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col6a1Q04857 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col6a1Q04857 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col6a1Q04857 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col6a1Q04857 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col6a1Q04857 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col6a1Q04857 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col6a1Q04857 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col6a1Q04857 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col6a1Q04857 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col6a1Q04857 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Col6a1Q04857 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col6a1Q04857 Gm14451-201ENSMUST00000121581 1542 ntBASIC14.89□□□□□ -0.03
Col6a1Q04857 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC14.89□□□□□ -0.03
Col6a1Q04857 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC14.89□□□□□ -0.03
Col6a1Q04857 Gm13786-201ENSMUST00000122371 333 ntBASIC14.89□□□□□ -0.03
Col6a1Q04857 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC14.89□□□□□ -0.03
Col6a1Q04857 Ighv1-62-201ENSMUST00000193406 350 ntBASIC14.89□□□□□ -0.03
Col6a1Q04857 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col6a1Q04857 AC154462.2-201ENSMUST00000227519 370 ntBASIC14.89□□□□□ -0.03
Col6a1Q04857 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col6a1Q04857 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col6a1Q04857 Gm5161-201ENSMUST00000075243 853 ntBASIC14.89□□□□□ -0.03
Col6a1Q04857 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col6a1Q04857 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col6a1Q04857 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col6a1Q04857 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col6a1Q04857 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col6a1Q04857 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Col6a1Q04857 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col6a1Q04857 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
Col6a1Q04857 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Col6a1Q04857 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col6a1Q04857 AC113441.2-201ENSMUST00000221538 1468 ntBASIC14.89□□□□□ -0.03
Col6a1Q04857 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC14.88□□□□□ -0.03
Col6a1Q04857 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col6a1Q04857 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col6a1Q04857 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Col6a1Q04857 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC14.88□□□□□ -0.03
Col6a1Q04857 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col6a1Q04857 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC14.88□□□□□ -0.03
Col6a1Q04857 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col6a1Q04857 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col6a1Q04857 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Col6a1Q04857 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col6a1Q04857 Gm2383-201ENSMUST00000181461 807 ntBASIC14.88□□□□□ -0.03
Col6a1Q04857 Nsd1-205ENSMUST00000224693 852 ntBASIC14.88□□□□□ -0.03
Col6a1Q04857 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col6a1Q04857 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Col6a1Q04857 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col6a1Q04857 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Col6a1Q04857 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col6a1Q04857 Gm24447-201ENSMUST00000083977 338 ntBASIC14.88□□□□□ -0.03
Col6a1Q04857 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col6a1Q04857 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col6a1Q04857 Gm44207-201ENSMUST00000204568 1424 ntBASIC14.88□□□□□ -0.03
Col6a1Q04857 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC14.88□□□□□ -0.03
Col6a1Q04857 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
Col6a1Q04857 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col6a1Q04857 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col6a1Q04857 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Col6a1Q04857 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col6a1Q04857 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col6a1Q04857 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms