Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC11.52□□□□□ -0.57
Col8a1Q00780 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC11.52□□□□□ -0.57
Col8a1Q00780 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC11.52□□□□□ -0.57
Col8a1Q00780 Ighv1-51-201ENSMUST00000192903 354 ntBASIC11.52□□□□□ -0.57
Col8a1Q00780 Gm42790-201ENSMUST00000201268 969 ntBASIC11.52□□□□□ -0.57
Col8a1Q00780 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC11.52□□□□□ -0.57
Col8a1Q00780 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Col8a1Q00780 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Col8a1Q00780 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC11.52□□□□□ -0.57
Col8a1Q00780 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Col8a1Q00780 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Col8a1Q00780 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Col8a1Q00780 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC11.51□□□□□ -0.57
Col8a1Q00780 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Col8a1Q00780 Gm14780-201ENSMUST00000118387 2737 ntBASIC11.51□□□□□ -0.57
Col8a1Q00780 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Gm15782-201ENSMUST00000121073 445 ntBASIC11.51□□□□□ -0.57
Col8a1Q00780 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC11.51□□□□□ -0.57
Col8a1Q00780 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC11.51□□□□□ -0.57
Col8a1Q00780 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Col8a1Q00780 AC154462.2-201ENSMUST00000227519 370 ntBASIC11.51□□□□□ -0.57
Col8a1Q00780 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Col8a1Q00780 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Mybphl-201ENSMUST00000090563 1276 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC11.51□□□□□ -0.57
Col8a1Q00780 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC11.51□□□□□ -0.57
Col8a1Q00780 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col8a1Q00780 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Col8a1Q00780 AC153366.2-201ENSMUST00000219461 1984 ntBASIC11.5□□□□□ -0.57
Col8a1Q00780 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC11.5□□□□□ -0.57
Col8a1Q00780 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC11.5□□□□□ -0.57
Col8a1Q00780 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Col8a1Q00780 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC11.5□□□□□ -0.57
Col8a1Q00780 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Col8a1Q00780 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Col8a1Q00780 AC167013.2-201ENSMUST00000228520 2684 ntBASIC11.5□□□□□ -0.57
Col8a1Q00780 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Col8a1Q00780 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
Col8a1Q00780 Gm11658-201ENSMUST00000120913 1008 ntBASIC11.5□□□□□ -0.57
Col8a1Q00780 Gm13786-201ENSMUST00000122371 333 ntBASIC11.5□□□□□ -0.57
Col8a1Q00780 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC11.5□□□□□ -0.57
Col8a1Q00780 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC11.5□□□□□ -0.57
Col8a1Q00780 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Col8a1Q00780 Gm2467-201ENSMUST00000182266 1010 ntBASIC11.5□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms