Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm6013-201ENSMUST00000212264 699 ntBASIC11.66□□□□□ -0.54
Nkx3-1P97436 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Gm9755-201ENSMUST00000032981 1356 ntBASIC11.66□□□□□ -0.54
Nkx3-1P97436 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Gm11400-201ENSMUST00000120853 1214 ntBASIC11.65□□□□□ -0.54
Nkx3-1P97436 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC11.65□□□□□ -0.54
Nkx3-1P97436 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Gm2445-201ENSMUST00000182798 989 ntBASIC11.65□□□□□ -0.54
Nkx3-1P97436 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx3-1P97436 CU024892.2-201ENSMUST00000224608 832 ntBASIC11.65□□□□□ -0.54
Nkx3-1P97436 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Gm12020-201ENSMUST00000119030 2042 ntBASIC11.65□□□□□ -0.54
Nkx3-1P97436 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx3-1P97436 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx3-1P97436 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Nkx3-1P97436 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.55
Nkx3-1P97436 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.55
Nkx3-1P97436 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
Nkx3-1P97436 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC11.65□□□□□ -0.55
Nkx3-1P97436 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Nkx3-1P97436 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.55
Nkx3-1P97436 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Nkx3-1P97436 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.55
Nkx3-1P97436 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Nkx3-1P97436 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC11.64□□□□□ -0.55
Nkx3-1P97436 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Gm12537-201ENSMUST00000119266 1002 ntBASIC11.64□□□□□ -0.55
Nkx3-1P97436 Gm12070-201ENSMUST00000119551 1002 ntBASIC11.64□□□□□ -0.55
Nkx3-1P97436 Gm12671-201ENSMUST00000119978 1002 ntBASIC11.64□□□□□ -0.55
Nkx3-1P97436 Gm13292-201ENSMUST00000120014 1000 ntBASIC11.64□□□□□ -0.55
Nkx3-1P97436 Gm12403-201ENSMUST00000121384 959 ntBASIC11.64□□□□□ -0.55
Nkx3-1P97436 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Gm4271-201ENSMUST00000174444 973 ntBASIC11.64□□□□□ -0.55
Nkx3-1P97436 Gm10359-201ENSMUST00000180167 1002 ntBASIC11.64□□□□□ -0.55
Nkx3-1P97436 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Gm12033-201ENSMUST00000180654 1002 ntBASIC11.64□□□□□ -0.55
Nkx3-1P97436 Gm5559-201ENSMUST00000180755 1002 ntBASIC11.64□□□□□ -0.55
Nkx3-1P97436 Gm4335-201ENSMUST00000182581 1004 ntBASIC11.64□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 49.4 ms