Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 AC155298.2-201ENSMUST00000225485 6226 ntBASIC13.9□□□□□ -0.18
Msx3P70354 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Msx3P70354 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Msx3P70354 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx3P70354 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx3P70354 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC13.89□□□□□ -0.19
Msx3P70354 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Msx3P70354 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC13.89□□□□□ -0.19
Msx3P70354 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx3P70354 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Msx3P70354 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx3P70354 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC13.89□□□□□ -0.19
Msx3P70354 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Msx3P70354 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx3P70354 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Msx3P70354 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC13.89□□□□□ -0.19
Msx3P70354 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC13.89□□□□□ -0.19
Msx3P70354 Gm15487-201ENSMUST00000122373 465 ntBASIC13.89□□□□□ -0.19
Msx3P70354 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Msx3P70354 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Msx3P70354 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx3P70354 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx3P70354 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Msx3P70354 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx3P70354 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Msx3P70354 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Msx3P70354 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Msx3P70354 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx3P70354 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx3P70354 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx3P70354 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx3P70354 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx3P70354 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC13.89□□□□□ -0.19
Msx3P70354 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Msx3P70354 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Msx3P70354 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx3P70354 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx3P70354 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Msx3P70354 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Msx3P70354 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx3P70354 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Msx3P70354 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC13.88□□□□□ -0.19
Msx3P70354 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx3P70354 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Msx3P70354 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx3P70354 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Msx3P70354 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx3P70354 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC13.88□□□□□ -0.19
Msx3P70354 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC13.88□□□□□ -0.19
Msx3P70354 Gm24694-201ENSMUST00000180054 110 ntBASIC13.88□□□□□ -0.19
Msx3P70354 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC13.88□□□□□ -0.19
Msx3P70354 Gm27663-201ENSMUST00000184839 110 ntBASIC13.88□□□□□ -0.19
Msx3P70354 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC13.88□□□□□ -0.19
Msx3P70354 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Msx3P70354 AC132863.2-201ENSMUST00000226643 799 ntBASIC13.88□□□□□ -0.19
Msx3P70354 Gm24447-201ENSMUST00000083977 338 ntBASIC13.88□□□□□ -0.19
Msx3P70354 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx3P70354 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx3P70354 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC13.88□□□□□ -0.19
Msx3P70354 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx3P70354 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC13.88□□□□□ -0.19
Msx3P70354 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx3P70354 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Msx3P70354 Grk6-205ENSMUST00000224653 2976 ntBASIC13.88□□□□□ -0.19
Msx3P70354 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC13.88□□□□□ -0.19
Msx3P70354 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx3P70354 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx3P70354 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Msx3P70354 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx3P70354 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Msx3P70354 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Msx3P70354 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
Msx3P70354 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Msx3P70354 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Msx3P70354 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Msx3P70354 Gm45242-201ENSMUST00000210666 2129 ntBASIC13.87□□□□□ -0.19
Msx3P70354 AC238940.1-201ENSMUST00000225106 1858 ntBASIC13.87□□□□□ -0.19
Msx3P70354 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Msx3P70354 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Msx3P70354 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Msx3P70354 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Msx3P70354 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Msx3P70354 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Msx3P70354 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Msx3P70354 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Msx3P70354 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC13.87□□□□□ -0.19
Msx3P70354 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC13.87□□□□□ -0.19
Msx3P70354 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Msx3P70354 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Msx3P70354 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Msx3P70354 Gm29667-201ENSMUST00000190817 490 ntBASIC13.87□□□□□ -0.19
Msx3P70354 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC13.87□□□□□ -0.19
Msx3P70354 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC13.87□□□□□ -0.19
Msx3P70354 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC13.87□□□□□ -0.19
Msx3P70354 Gm5161-201ENSMUST00000075243 853 ntBASIC13.87□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms