Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cux1P53564 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Cux1P53564 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC20.42■□□□□ 0.86
Cux1P53564 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cux1P53564 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Cux1P53564 Gm9061-201ENSMUST00000182707 1006 ntBASIC20.42■□□□□ 0.86
Cux1P53564 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC20.42■□□□□ 0.86
Cux1P53564 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cux1P53564 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cux1P53564 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC20.42■□□□□ 0.86
Cux1P53564 Gm19963-201ENSMUST00000208413 1255 ntBASIC20.42■□□□□ 0.86
Cux1P53564 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Cux1P53564 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
Cux1P53564 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Cux1P53564 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Cux1P53564 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cux1P53564 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cux1P53564 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cux1P53564 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cux1P53564 Gm43289-201ENSMUST00000200537 1475 ntBASIC20.41■□□□□ 0.86
Cux1P53564 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC20.41■□□□□ 0.86
Cux1P53564 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Cux1P53564 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Cux1P53564 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC20.41■□□□□ 0.86
Cux1P53564 Gm44967-201ENSMUST00000207047 631 ntBASIC20.41■□□□□ 0.86
Cux1P53564 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cux1P53564 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cux1P53564 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cux1P53564 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cux1P53564 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cux1P53564 Daam2-202ENSMUST00000224595 1926 ntBASIC20.41■□□□□ 0.86
Cux1P53564 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Cux1P53564 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cux1P53564 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC20.4■□□□□ 0.86
Cux1P53564 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cux1P53564 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Cux1P53564 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC20.4■□□□□ 0.86
Cux1P53564 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cux1P53564 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cux1P53564 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cux1P53564 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Cux1P53564 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cux1P53564 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC20.4■□□□□ 0.86
Cux1P53564 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cux1P53564 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Cux1P53564 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cux1P53564 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cux1P53564 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cux1P53564 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Cux1P53564 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Cux1P53564 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
Cux1P53564 Gm8099-201ENSMUST00000200510 742 ntBASIC20.4■□□□□ 0.86
Cux1P53564 Gm13097-201ENSMUST00000210722 397 ntBASIC20.4■□□□□ 0.86
Cux1P53564 AC166095.1-201ENSMUST00000223731 1241 ntBASIC20.4■□□□□ 0.86
Cux1P53564 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cux1P53564 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cux1P53564 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cux1P53564 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Cux1P53564 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cux1P53564 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC20.4■□□□□ 0.86
Cux1P53564 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC20.4■□□□□ 0.86
Cux1P53564 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cux1P53564 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
Cux1P53564 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Cux1P53564 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Cux1P53564 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Cux1P53564 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Cux1P53564 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.85
Cux1P53564 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
Cux1P53564 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC20.39■□□□□ 0.85
Cux1P53564 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Cux1P53564 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Cux1P53564 Gm22058-201ENSMUST00000083393 310 ntBASIC20.39■□□□□ 0.85
Cux1P53564 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Cux1P53564 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Cux1P53564 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Cux1P53564 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Cux1P53564 Gm10782-202ENSMUST00000223775 1480 ntBASIC20.39■□□□□ 0.85
Cux1P53564 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Cux1P53564 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Cux1P53564 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Cux1P53564 Gm28182-201ENSMUST00000188354 2477 ntBASIC20.39■□□□□ 0.85
Cux1P53564 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cux1P53564 AC159649.2-201ENSMUST00000222984 3223 ntBASIC20.38■□□□□ 0.85
Cux1P53564 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cux1P53564 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cux1P53564 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Cux1P53564 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC20.38■□□□□ 0.85
Cux1P53564 Gm15276-201ENSMUST00000145953 498 ntBASIC20.38■□□□□ 0.85
Cux1P53564 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC20.38■□□□□ 0.85
Cux1P53564 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
Cux1P53564 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cux1P53564 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Cux1P53564 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cux1P53564 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cux1P53564 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cux1P53564 Gm37737-201ENSMUST00000195013 1638 ntBASIC20.38■□□□□ 0.85
Cux1P53564 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Cux1P53564 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cux1P53564 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms