Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Cd40lgP27548 Gm6218-201ENSMUST00000219812 628 ntBASIC12.5□□□□□ -0.41
Cd40lgP27548 Gm19220-201ENSMUST00000222682 803 ntBASIC12.5□□□□□ -0.41
Cd40lgP27548 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cd40lgP27548 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC12.5□□□□□ -0.41
Cd40lgP27548 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Cd40lgP27548 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cd40lgP27548 Crybg3-201ENSMUST00000044604 5231 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cd40lgP27548 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cd40lgP27548 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC12.5□□□□□ -0.41
Cd40lgP27548 Gm42471-201ENSMUST00000201457 1865 ntBASIC12.5□□□□□ -0.41
Cd40lgP27548 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cd40lgP27548 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Cd40lgP27548 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cd40lgP27548 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cd40lgP27548 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Cd40lgP27548 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Cd40lgP27548 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cd40lgP27548 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Cd40lgP27548 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Cd40lgP27548 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cd40lgP27548 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cd40lgP27548 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cd40lgP27548 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC12.49□□□□□ -0.41
Cd40lgP27548 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Cd40lgP27548 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cd40lgP27548 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Cd40lgP27548 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Cd40lgP27548 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cd40lgP27548 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cd40lgP27548 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Cd40lgP27548 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cd40lgP27548 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cd40lgP27548 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Cd40lgP27548 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cd40lgP27548 Gm6263-201ENSMUST00000120029 1342 ntBASIC12.49□□□□□ -0.41
Cd40lgP27548 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC12.49□□□□□ -0.41
Cd40lgP27548 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Cd40lgP27548 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Cd40lgP27548 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Cd40lgP27548 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC12.49□□□□□ -0.41
Cd40lgP27548 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Cd40lgP27548 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC12.49□□□□□ -0.41
Cd40lgP27548 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC12.49□□□□□ -0.41
Cd40lgP27548 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Cd40lgP27548 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Cd40lgP27548 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC12.49□□□□□ -0.41
Cd40lgP27548 AC154687.2-201ENSMUST00000223853 640 ntBASIC12.49□□□□□ -0.41
Cd40lgP27548 CT030704.2-201ENSMUST00000228887 494 ntBASIC12.49□□□□□ -0.41
Cd40lgP27548 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cd40lgP27548 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC12.49□□□□□ -0.41
Cd40lgP27548 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cd40lgP27548 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Cd40lgP27548 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Cd40lgP27548 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cd40lgP27548 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Cd40lgP27548 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Cd40lgP27548 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Cd40lgP27548 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cd40lgP27548 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC12.49□□□□□ -0.41
Cd40lgP27548 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC12.49□□□□□ -0.41
Cd40lgP27548 AC121801.1-201ENSMUST00000225363 1899 ntBASIC12.48□□□□□ -0.41
Cd40lgP27548 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cd40lgP27548 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Cd40lgP27548 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Cd40lgP27548 Gm42769-201ENSMUST00000198576 1659 ntBASIC12.48□□□□□ -0.41
Cd40lgP27548 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC12.48□□□□□ -0.41
Cd40lgP27548 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cd40lgP27548 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Cd40lgP27548 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cd40lgP27548 Ldb3-207ENSMUST00000227819 1499 ntBASIC12.48□□□□□ -0.41
Cd40lgP27548 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cd40lgP27548 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Cd40lgP27548 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cd40lgP27548 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cd40lgP27548 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cd40lgP27548 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cd40lgP27548 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Cd40lgP27548 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cd40lgP27548 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Cd40lgP27548 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
Cd40lgP27548 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC12.48□□□□□ -0.41
Cd40lgP27548 Gm28631-201ENSMUST00000190740 334 ntBASIC12.48□□□□□ -0.41
Cd40lgP27548 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC12.48□□□□□ -0.41
Cd40lgP27548 AC139580.1-202ENSMUST00000223574 928 ntBASIC12.48□□□□□ -0.41
Cd40lgP27548 AC166997.1-201ENSMUST00000225122 572 ntBASIC12.48□□□□□ -0.41
Cd40lgP27548 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Cd40lgP27548 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cd40lgP27548 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Cd40lgP27548 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cd40lgP27548 Mtmr10-201ENSMUST00000032736 5205 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cd40lgP27548 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Cd40lgP27548 AC126549.2-201ENSMUST00000223997 1976 ntBASIC12.48□□□□□ -0.41
Cd40lgP27548 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cd40lgP27548 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cd40lgP27548 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Cd40lgP27548 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC12.48□□□□□ -0.41
Cd40lgP27548 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cd40lgP27548 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cd40lgP27548 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 44.9 ms