Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Gm42690-201ENSMUST00000197921 1836 ntBASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Gm38346-201ENSMUST00000192379 2639 ntBASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Gm16215-201ENSMUST00000161990 637 ntBASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Gm27437-201ENSMUST00000183429 107 ntBASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Gm9797-201ENSMUST00000052902 613 ntBASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Gm14371-201ENSMUST00000138925 1518 ntBASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Prpf40aQ9R1C7 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Gm17795-201ENSMUST00000214505 757 ntBASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 CT009738.1-201ENSMUST00000219031 809 ntBASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Cox17-201ENSMUST00000050273 444 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Prpf40aQ9R1C7 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 Gm22189-201ENSMUST00000103822 86 ntBASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 Gm27772-201ENSMUST00000184900 187 ntBASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 Gm45195-201ENSMUST00000205597 1008 ntBASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 AC124732.1-201ENSMUST00000221551 910 ntBASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 AC139580.1-202ENSMUST00000223574 928 ntBASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Prpf40aQ9R1C7 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 79.2 ms