Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Trem1Q9JKE2 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC12.11□□□□□ -0.47
Trem1Q9JKE2 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trem1Q9JKE2 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Trem1Q9JKE2 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trem1Q9JKE2 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trem1Q9JKE2 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Trem1Q9JKE2 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trem1Q9JKE2 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Trem1Q9JKE2 AC124433.1-202ENSMUST00000224762 1535 ntBASIC12.11□□□□□ -0.47
Trem1Q9JKE2 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trem1Q9JKE2 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trem1Q9JKE2 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trem1Q9JKE2 Rangap1-202ENSMUST00000170134 3002 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trem1Q9JKE2 Sh3tc1-201ENSMUST00000070203 4549 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Bpnt1-201ENSMUST00000027916 2200 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Ptprh-201ENSMUST00000049113 3495 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Gm37153-201ENSMUST00000193637 231 ntBASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Cdh20-201ENSMUST00000062528 4012 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Pcgf2-207ENSMUST00000179765 2485 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trem1Q9JKE2 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Zfp941-201ENSMUST00000080651 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Gm44357-201ENSMUST00000195897 142 ntBASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Gm19658-201ENSMUST00000196231 138 ntBASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Gm44367-201ENSMUST00000196836 138 ntBASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Gm44350-201ENSMUST00000197197 138 ntBASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Gm44390-201ENSMUST00000197533 144 ntBASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Gm44313-201ENSMUST00000198018 138 ntBASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Gm44486-201ENSMUST00000198508 138 ntBASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Gm44314-201ENSMUST00000199263 138 ntBASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Gm44394-201ENSMUST00000199558 138 ntBASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Gm44484-201ENSMUST00000199873 138 ntBASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Gm44466-201ENSMUST00000200264 138 ntBASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Gm44359-201ENSMUST00000200671 138 ntBASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trem1Q9JKE2 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 50.6 ms