Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Scn4aQ9ER60 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC17.94■□□□□ 0.46
Scn4aQ9ER60 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Scn4aQ9ER60 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Scn4aQ9ER60 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Scn4aQ9ER60 Gm28388-201ENSMUST00000186262 437 ntBASIC17.94■□□□□ 0.46
Scn4aQ9ER60 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC17.94■□□□□ 0.46
Scn4aQ9ER60 Gm43752-201ENSMUST00000198475 697 ntBASIC17.94■□□□□ 0.46
Scn4aQ9ER60 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Scn4aQ9ER60 Mrnip-201ENSMUST00000020647 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Scn4aQ9ER60 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC17.94■□□□□ 0.46
Scn4aQ9ER60 Commd4-201ENSMUST00000065358 858 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Scn4aQ9ER60 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC17.94■□□□□ 0.46
Scn4aQ9ER60 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Scn4aQ9ER60 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Scn4aQ9ER60 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Scn4aQ9ER60 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Scn4aQ9ER60 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Scn4aQ9ER60 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Gm6397-201ENSMUST00000161973 1069 ntBASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Gm42518-201ENSMUST00000196277 938 ntBASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Gm3619-201ENSMUST00000219947 775 ntBASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Gm270-201ENSMUST00000223010 976 ntBASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Eny2-204ENSMUST00000226827 558 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Gm10135-201ENSMUST00000043711 252 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Gm44291-201ENSMUST00000203102 2865 ntBASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 E030018B13Rik-201ENSMUST00000177638 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Gm44329-201ENSMUST00000197469 112 ntBASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Arhgef33-210ENSMUST00000225548 456 ntBASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Tbca-201ENSMUST00000046644 559 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn4aQ9ER60 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Scn4aQ9ER60 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn4aQ9ER60 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn4aQ9ER60 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn4aQ9ER60 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn4aQ9ER60 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn4aQ9ER60 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
Scn4aQ9ER60 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn4aQ9ER60 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn4aQ9ER60 Ube2q2-203ENSMUST00000122441 2081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn4aQ9ER60 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Scn4aQ9ER60 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn4aQ9ER60 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC17.92■□□□□ 0.46
Scn4aQ9ER60 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC17.92■□□□□ 0.46
Scn4aQ9ER60 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC17.92■□□□□ 0.46
Scn4aQ9ER60 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Scn4aQ9ER60 Gm25201-201ENSMUST00000083093 170 ntBASIC17.92■□□□□ 0.46
Scn4aQ9ER60 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Scn4aQ9ER60 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Scn4aQ9ER60 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn4aQ9ER60 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn4aQ9ER60 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Scn4aQ9ER60 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Scn4aQ9ER60 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn4aQ9ER60 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Smim11-202ENSMUST00000118064 782 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Gm14219-201ENSMUST00000120414 288 ntBASIC17.91■□□□□ 0.46
Scn4aQ9ER60 BB557941-201ENSMUST00000126549 1097 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Gm13965-201ENSMUST00000154834 576 ntTSL 3 BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Scg5-201ENSMUST00000024005 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 59.8 ms