Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Vps28Q9D1C8 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Gm11478-201ENSMUST00000117851 599 ntBASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Gm28911-201ENSMUST00000188837 117 ntBASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Vps28Q9D1C8 AC155252.1-201ENSMUST00000226462 1208 ntBASIC13.87□□□□□ -0.19
Vps28Q9D1C8 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Vps28Q9D1C8 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Gm38346-201ENSMUST00000192379 2639 ntBASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Vps28Q9D1C8 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Gm44719-201ENSMUST00000206404 149 ntBASIC13.86□□□□□ -0.19
Vps28Q9D1C8 AC162801.1-201ENSMUST00000220612 198 ntBASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Gm12500-202ENSMUST00000186471 2428 ntBASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Vps28Q9D1C8 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Gm5639-201ENSMUST00000122305 2403 ntBASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Gm5186-201ENSMUST00000218781 920 ntBASIC13.85□□□□□ -0.19
Vps28Q9D1C8 AC150560.1-201ENSMUST00000227731 1187 ntBASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Vps28Q9D1C8 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Vps28Q9D1C8 Gm38094-201ENSMUST00000195864 2978 ntBASIC13.84□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms