Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Gm22331-201ENSMUST00000158066 136 ntBASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Proscos-202ENSMUST00000178990 666 ntBASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Gm6007-201ENSMUST00000208170 823 ntBASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sf3b1Q99NB9 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Sf3b1Q99NB9 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Sf3b1Q99NB9 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC14.33□□□□□ -0.11
Sf3b1Q99NB9 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.11
Sf3b1Q99NB9 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
Sf3b1Q99NB9 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Sf3b1Q99NB9 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Sf3b1Q99NB9 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Sf3b1Q99NB9 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Gm10156-201ENSMUST00000122364 462 ntBASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Gm17420-201ENSMUST00000164753 153 ntBASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Gm8810-201ENSMUST00000172895 754 ntBASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Gm37424-201ENSMUST00000191727 561 ntBASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Gm40466-201ENSMUST00000212174 422 ntBASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 AC140451.2-201ENSMUST00000228030 664 ntBASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Rn7sk-201ENSMUST00000083103 331 ntBASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Gm26315-201ENSMUST00000083890 321 ntBASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Gm20632-201ENSMUST00000176760 2427 ntBASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sf3b1Q99NB9 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Gm9755-201ENSMUST00000032981 1356 ntBASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Gm13392-201ENSMUST00000117708 150 ntBASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Gm13886-201ENSMUST00000117876 1183 ntBASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Gm43818-201ENSMUST00000200605 466 ntBASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Sf3b1Q99NB9 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC14.31□□□□□ -0.12
Sf3b1Q99NB9 Gm42769-201ENSMUST00000198576 1659 ntBASIC14.31□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 42.9 ms