Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usp11Q99K46 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Usp11Q99K46 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usp11Q99K46 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usp11Q99K46 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Usp11Q99K46 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Usp11Q99K46 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Usp11Q99K46 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
Usp11Q99K46 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Usp11Q99K46 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp11Q99K46 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp11Q99K46 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp11Q99K46 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp11Q99K46 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC14.28□□□□□ -0.12
Usp11Q99K46 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp11Q99K46 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC14.28□□□□□ -0.12
Usp11Q99K46 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp11Q99K46 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp11Q99K46 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp11Q99K46 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Usp11Q99K46 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp11Q99K46 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC14.28□□□□□ -0.12
Usp11Q99K46 Gm4875-201ENSMUST00000118257 786 ntBASIC14.28□□□□□ -0.12
Usp11Q99K46 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC14.28□□□□□ -0.12
Usp11Q99K46 Gm15487-201ENSMUST00000122373 465 ntBASIC14.28□□□□□ -0.12
Usp11Q99K46 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC14.28□□□□□ -0.12
Usp11Q99K46 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC14.28□□□□□ -0.12
Usp11Q99K46 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC14.28□□□□□ -0.12
Usp11Q99K46 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Usp11Q99K46 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Usp11Q99K46 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Usp11Q99K46 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp11Q99K46 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Usp11Q99K46 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC14.28□□□□□ -0.12
Usp11Q99K46 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC14.28□□□□□ -0.12
Usp11Q99K46 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC14.28□□□□□ -0.12
Usp11Q99K46 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC14.28□□□□□ -0.12
Usp11Q99K46 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Usp11Q99K46 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC14.28□□□□□ -0.12
Usp11Q99K46 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC14.28□□□□□ -0.12
Usp11Q99K46 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC14.28□□□□□ -0.12
Usp11Q99K46 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp11Q99K46 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp11Q99K46 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp11Q99K46 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp11Q99K46 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Usp11Q99K46 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp11Q99K46 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Usp11Q99K46 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Usp11Q99K46 Gm15889-202ENSMUST00000212669 2443 ntBASIC14.27□□□□□ -0.12
Usp11Q99K46 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp11Q99K46 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp11Q99K46 AC115735.4-201ENSMUST00000227460 1944 ntBASIC14.27□□□□□ -0.12
Usp11Q99K46 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp11Q99K46 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp11Q99K46 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp11Q99K46 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC14.27□□□□□ -0.12
Usp11Q99K46 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp11Q99K46 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.12
Usp11Q99K46 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp11Q99K46 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Usp11Q99K46 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp11Q99K46 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp11Q99K46 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Usp11Q99K46 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Usp11Q99K46 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Usp11Q99K46 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Usp11Q99K46 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC14.27□□□□□ -0.13
Usp11Q99K46 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Usp11Q99K46 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Usp11Q99K46 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp11Q99K46 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC14.27□□□□□ -0.13
Usp11Q99K46 AC238811.1-201ENSMUST00000225302 441 ntBASIC14.27□□□□□ -0.13
Usp11Q99K46 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp11Q99K46 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp11Q99K46 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Usp11Q99K46 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp11Q99K46 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
Usp11Q99K46 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp11Q99K46 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp11Q99K46 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.13
Usp11Q99K46 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp11Q99K46 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp11Q99K46 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Usp11Q99K46 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Usp11Q99K46 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp11Q99K46 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp11Q99K46 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp11Q99K46 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp11Q99K46 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Usp11Q99K46 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp11Q99K46 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp11Q99K46 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Usp11Q99K46 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp11Q99K46 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Usp11Q99K46 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp11Q99K46 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp11Q99K46 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp11Q99K46 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp11Q99K46 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC14.26□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms