Protein–RNA interactions for Protein: Q5NCC9

Trim58, E3 ubiquitin-protein ligase TRIM58, mousemouse

Predictions only

Length 485 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim58Q5NCC9 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Trim58Q5NCC9 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trim58Q5NCC9 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC17.13■□□□□ 0.33
Trim58Q5NCC9 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim58Q5NCC9 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim58Q5NCC9 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Trim58Q5NCC9 Gm12485-201ENSMUST00000119641 291 ntBASIC17.13■□□□□ 0.33
Trim58Q5NCC9 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC17.13■□□□□ 0.33
Trim58Q5NCC9 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trim58Q5NCC9 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
Trim58Q5NCC9 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC17.13■□□□□ 0.33
Trim58Q5NCC9 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trim58Q5NCC9 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Trim58Q5NCC9 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim58Q5NCC9 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim58Q5NCC9 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim58Q5NCC9 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim58Q5NCC9 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim58Q5NCC9 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Gm15376-201ENSMUST00000122258 783 ntBASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Gm26464-201ENSMUST00000157094 305 ntBASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Gm19078-201ENSMUST00000206311 727 ntBASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Gm45638-201ENSMUST00000211507 2878 ntBASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim58Q5NCC9 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim58Q5NCC9 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Trim58Q5NCC9 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim58Q5NCC9 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim58Q5NCC9 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim58Q5NCC9 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim58Q5NCC9 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC17.11■□□□□ 0.33
Trim58Q5NCC9 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC17.11■□□□□ 0.33
Trim58Q5NCC9 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC17.11■□□□□ 0.33
Trim58Q5NCC9 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim58Q5NCC9 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim58Q5NCC9 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC17.11■□□□□ 0.33
Trim58Q5NCC9 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC17.11■□□□□ 0.33
Trim58Q5NCC9 Gm17870-201ENSMUST00000219489 1174 ntBASIC17.11■□□□□ 0.33
Trim58Q5NCC9 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim58Q5NCC9 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim58Q5NCC9 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim58Q5NCC9 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Trim58Q5NCC9 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim58Q5NCC9 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim58Q5NCC9 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Gm43423-201ENSMUST00000198390 2094 ntBASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Gm45195-201ENSMUST00000205597 1008 ntBASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Gm20949-201ENSMUST00000206478 952 ntBASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Wdyhv1-203ENSMUST00000226889 394 ntBASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Gm37644-201ENSMUST00000192190 2270 ntBASIC17.1■□□□□ 0.33
Trim58Q5NCC9 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim58Q5NCC9 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms