Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Gm38294-201ENSMUST00000192831 381 ntBASIC13.17□□□□□ -0.3
Col28a1Q2UY11 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Gm27194-201ENSMUST00000175753 2936 ntBASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Gm6415-201ENSMUST00000118488 348 ntBASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Gm15693-201ENSMUST00000120470 637 ntBASIC13.16□□□□□ -0.3
Col28a1Q2UY11 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Gm17837-201ENSMUST00000186435 985 ntBASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Zkscan14-203ENSMUST00000198959 2243 ntBASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col28a1Q2UY11 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Gm29741-201ENSMUST00000192667 421 ntBASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Gm43423-201ENSMUST00000198390 2094 ntBASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Col28a1Q2UY11 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms