Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Gm15619-201ENSMUST00000128415 1294 ntTSL 3 BASIC20.29■□□□□ 0.84
Col17a1Q07563 Gm25881-201ENSMUST00000157783 103 ntBASIC20.29■□□□□ 0.84
Col17a1Q07563 Gm6397-201ENSMUST00000161973 1069 ntBASIC20.29■□□□□ 0.84
Col17a1Q07563 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Col17a1Q07563 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Col17a1Q07563 Gm27910-201ENSMUST00000185004 107 ntBASIC20.29■□□□□ 0.84
Col17a1Q07563 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col17a1Q07563 Gm45570-201ENSMUST00000211137 495 ntTSL 5 BASIC20.29■□□□□ 0.84
Col17a1Q07563 Gm31557-202ENSMUST00000213995 722 ntTSL 5 BASIC20.29■□□□□ 0.84
Col17a1Q07563 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col17a1Q07563 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Col17a1Q07563 Lta-201ENSMUST00000025266 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col17a1Q07563 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col17a1Q07563 Pisd-ps2-201ENSMUST00000127960 1424 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col17a1Q07563 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col17a1Q07563 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col17a1Q07563 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col17a1Q07563 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col17a1Q07563 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col17a1Q07563 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col17a1Q07563 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col17a1Q07563 Gm16081-201ENSMUST00000155992 684 ntTSL 3 BASIC20.28■□□□□ 0.84
Col17a1Q07563 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col17a1Q07563 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC20.28■□□□□ 0.84
Col17a1Q07563 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col17a1Q07563 Gm3283-201ENSMUST00000199319 1350 ntBASIC20.28■□□□□ 0.84
Col17a1Q07563 Gm18059-201ENSMUST00000208073 580 ntBASIC20.28■□□□□ 0.84
Col17a1Q07563 Gm18460-201ENSMUST00000208088 464 ntBASIC20.28■□□□□ 0.84
Col17a1Q07563 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Col17a1Q07563 Gpr137b-ps-202ENSMUST00000220647 1159 ntBASIC20.28■□□□□ 0.84
Col17a1Q07563 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col17a1Q07563 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col17a1Q07563 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col17a1Q07563 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col17a1Q07563 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC20.28■□□□□ 0.84
Col17a1Q07563 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col17a1Q07563 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col17a1Q07563 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Col17a1Q07563 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col17a1Q07563 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col17a1Q07563 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col17a1Q07563 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col17a1Q07563 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Col17a1Q07563 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Col17a1Q07563 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Col17a1Q07563 Gm12246-201ENSMUST00000129126 503 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Col17a1Q07563 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC20.27■□□□□ 0.84
Col17a1Q07563 Gm37299-201ENSMUST00000193951 826 ntBASIC20.27■□□□□ 0.84
Col17a1Q07563 1700086D15Rik-201ENSMUST00000020855 1092 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Col17a1Q07563 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC20.27■□□□□ 0.84
Col17a1Q07563 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC20.27■□□□□ 0.84
Col17a1Q07563 Gm19009-201ENSMUST00000223072 823 ntBASIC20.27■□□□□ 0.84
Col17a1Q07563 Pla2g1b-201ENSMUST00000031495 557 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col17a1Q07563 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col17a1Q07563 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC20.27■□□□□ 0.84
Col17a1Q07563 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Col17a1Q07563 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col17a1Q07563 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col17a1Q07563 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col17a1Q07563 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Col17a1Q07563 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col17a1Q07563 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
Col17a1Q07563 Gm10461-201ENSMUST00000202073 4786 ntBASIC20.27■□□□□ 0.83
Col17a1Q07563 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col17a1Q07563 E330011O21Rik-202ENSMUST00000209498 1403 ntTSL 5 BASIC20.26■□□□□ 0.83
Col17a1Q07563 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC20.26■□□□□ 0.83
Col17a1Q07563 Gm12036-201ENSMUST00000120008 530 ntBASIC20.26■□□□□ 0.83
Col17a1Q07563 Igf1-205ENSMUST00000121952 798 ntTSL 3 BASIC20.26■□□□□ 0.83
Col17a1Q07563 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Col17a1Q07563 A430105J06Rik-201ENSMUST00000180869 1275 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Col17a1Q07563 Gm2445-201ENSMUST00000182798 989 ntBASIC20.26■□□□□ 0.83
Col17a1Q07563 1700025F24Rik-201ENSMUST00000185238 894 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Col17a1Q07563 Gm44158-201ENSMUST00000203881 505 ntBASIC20.26■□□□□ 0.83
Col17a1Q07563 Gm7904-201ENSMUST00000217049 465 ntBASIC20.26■□□□□ 0.83
Col17a1Q07563 Gm45925-201ENSMUST00000218882 744 ntBASIC20.26■□□□□ 0.83
Col17a1Q07563 AC112146.1-201ENSMUST00000221641 733 ntTSL 3 BASIC20.26■□□□□ 0.83
Col17a1Q07563 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col17a1Q07563 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col17a1Q07563 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col17a1Q07563 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Col17a1Q07563 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col17a1Q07563 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC20.25■□□□□ 0.83
Col17a1Q07563 Gm5525-201ENSMUST00000190438 1312 ntBASIC20.25■□□□□ 0.83
Col17a1Q07563 Aurkc-203ENSMUST00000207711 1320 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col17a1Q07563 Gm14644-201ENSMUST00000116671 647 ntBASIC20.25■□□□□ 0.83
Col17a1Q07563 Treml4-202ENSMUST00000125426 992 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col17a1Q07563 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
Col17a1Q07563 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC20.25■□□□□ 0.83
Col17a1Q07563 Fxyd5-209ENSMUST00000162087 762 ntAPPRIS P3 TSL 3 BASIC20.25■□□□□ 0.83
Col17a1Q07563 Gm17116-201ENSMUST00000169175 1013 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col17a1Q07563 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col17a1Q07563 Gm42657-201ENSMUST00000201746 211 ntBASIC20.25■□□□□ 0.83
Col17a1Q07563 Gm6905-201ENSMUST00000205729 511 ntBASIC20.25■□□□□ 0.83
Col17a1Q07563 Gm270-201ENSMUST00000223010 976 ntBASIC20.25■□□□□ 0.83
Col17a1Q07563 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col17a1Q07563 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col17a1Q07563 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col17a1Q07563 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col17a1Q07563 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col17a1Q07563 Gm45630-201ENSMUST00000210243 1911 ntBASIC20.25■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms