Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Rfx1P48377 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Rfx1P48377 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Rfx1P48377 Gm27196-201ENSMUST00000184787 2582 ntBASIC16.16■□□□□ 0.18
Rfx1P48377 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Rfx1P48377 Gm14452-201ENSMUST00000118680 1632 ntBASIC16.16■□□□□ 0.18
Rfx1P48377 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC16.15■□□□□ 0.18
Rfx1P48377 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rfx1P48377 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rfx1P48377 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rfx1P48377 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rfx1P48377 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rfx1P48377 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Rfx1P48377 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rfx1P48377 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rfx1P48377 Gm5566-201ENSMUST00000116118 459 ntBASIC16.15■□□□□ 0.18
Rfx1P48377 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Rfx1P48377 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Rfx1P48377 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC16.15■□□□□ 0.18
Rfx1P48377 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Rfx1P48377 Ighv1-51-201ENSMUST00000192903 354 ntBASIC16.15■□□□□ 0.18
Rfx1P48377 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Rfx1P48377 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rfx1P48377 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rfx1P48377 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rfx1P48377 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Rfx1P48377 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rfx1P48377 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Rfx1P48377 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Rfx1P48377 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rfx1P48377 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC16.15■□□□□ 0.18
Rfx1P48377 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Rfx1P48377 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Rfx1P48377 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rfx1P48377 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rfx1P48377 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
Rfx1P48377 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Rfx1P48377 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rfx1P48377 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rfx1P48377 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Rfx1P48377 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Rfx1P48377 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rfx1P48377 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rfx1P48377 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rfx1P48377 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Rfx1P48377 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rfx1P48377 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rfx1P48377 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Rfx1P48377 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC16.14■□□□□ 0.17
Rfx1P48377 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC16.14■□□□□ 0.17
Rfx1P48377 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
Rfx1P48377 Gm9719-201ENSMUST00000162765 543 ntBASIC16.14■□□□□ 0.17
Rfx1P48377 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Rfx1P48377 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC16.14■□□□□ 0.17
Rfx1P48377 Dupd1-202ENSMUST00000224735 548 ntBASIC16.14■□□□□ 0.17
Rfx1P48377 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rfx1P48377 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rfx1P48377 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rfx1P48377 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rfx1P48377 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Rfx1P48377 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rfx1P48377 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rfx1P48377 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Rfx1P48377 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
Rfx1P48377 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rfx1P48377 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rfx1P48377 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rfx1P48377 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rfx1P48377 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rfx1P48377 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rfx1P48377 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rfx1P48377 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rfx1P48377 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC16.13■□□□□ 0.17
Rfx1P48377 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rfx1P48377 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Rfx1P48377 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rfx1P48377 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC16.13■□□□□ 0.17
Rfx1P48377 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC16.13■□□□□ 0.17
Rfx1P48377 Gm4913-201ENSMUST00000117075 1290 ntBASIC16.13■□□□□ 0.17
Rfx1P48377 Gm12428-201ENSMUST00000119844 727 ntBASIC16.13■□□□□ 0.17
Rfx1P48377 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC16.13■□□□□ 0.17
Rfx1P48377 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Rfx1P48377 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Rfx1P48377 Gm4971-201ENSMUST00000205991 1108 ntBASIC16.13■□□□□ 0.17
Rfx1P48377 AC121804.3-201ENSMUST00000223420 295 ntBASIC16.13■□□□□ 0.17
Rfx1P48377 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rfx1P48377 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Rfx1P48377 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rfx1P48377 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rfx1P48377 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Rfx1P48377 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rfx1P48377 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rfx1P48377 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC16.13■□□□□ 0.17
Rfx1P48377 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC16.13■□□□□ 0.17
Rfx1P48377 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Rfx1P48377 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Rfx1P48377 Syt7-205ENSMUST00000224135 1557 ntBASIC16.13■□□□□ 0.17
Rfx1P48377 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Rfx1P48377 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Rfx1P48377 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms