Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col18a1P39061 Gm42872-201ENSMUST00000200026 1967 ntBASIC17.5■□□□□ 0.39
Col18a1P39061 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col18a1P39061 Apoo-202ENSMUST00000113896 1032 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col18a1P39061 Mup-ps26-201ENSMUST00000121751 202 ntBASIC17.5■□□□□ 0.39
Col18a1P39061 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col18a1P39061 Gm45242-201ENSMUST00000210666 2129 ntBASIC17.5■□□□□ 0.39
Col18a1P39061 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC17.5■□□□□ 0.39
Col18a1P39061 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col18a1P39061 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col18a1P39061 AC091458.1-201ENSMUST00000220902 1361 ntBASIC17.5■□□□□ 0.39
Col18a1P39061 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col18a1P39061 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC17.49■□□□□ 0.39
Col18a1P39061 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC17.49■□□□□ 0.39
Col18a1P39061 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col18a1P39061 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col18a1P39061 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Col18a1P39061 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC17.49■□□□□ 0.39
Col18a1P39061 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
Col18a1P39061 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col18a1P39061 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col18a1P39061 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col18a1P39061 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col18a1P39061 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Col18a1P39061 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC17.49■□□□□ 0.39
Col18a1P39061 Itpr3os-201ENSMUST00000143605 794 ntTSL 2 BASIC17.49■□□□□ 0.39
Col18a1P39061 Gm15881-201ENSMUST00000148792 942 ntBASIC17.49■□□□□ 0.39
Col18a1P39061 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Col18a1P39061 Rn7s6-201ENSMUST00000175005 291 ntBASIC17.49■□□□□ 0.39
Col18a1P39061 AC124457.1-201ENSMUST00000198845 120 ntBASIC17.49■□□□□ 0.39
Col18a1P39061 Nras-208ENSMUST00000200069 831 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
Col18a1P39061 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC17.49■□□□□ 0.39
Col18a1P39061 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC17.49■□□□□ 0.39
Col18a1P39061 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Col18a1P39061 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col18a1P39061 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Col18a1P39061 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Col18a1P39061 Arl6ip5-201ENSMUST00000044681 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col18a1P39061 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col18a1P39061 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col18a1P39061 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Col18a1P39061 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col18a1P39061 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col18a1P39061 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col18a1P39061 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Tlx1-202ENSMUST00000174617 806 ntTSL 5 BASIC17.48■□□□□ 0.39
Col18a1P39061 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC17.48■□□□□ 0.39
Col18a1P39061 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Rps18-ps3-201ENSMUST00000080443 456 ntBASIC17.48■□□□□ 0.39
Col18a1P39061 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC17.48■□□□□ 0.39
Col18a1P39061 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC17.48■□□□□ 0.39
Col18a1P39061 Qdpr-209ENSMUST00000198258 1172 ntTSL 5 BASIC17.48■□□□□ 0.39
Col18a1P39061 Gm45460-201ENSMUST00000211385 1038 ntTSL 5 BASIC17.48■□□□□ 0.39
Col18a1P39061 Gm29676-202ENSMUST00000222409 364 ntTSL 2 BASIC17.48■□□□□ 0.39
Col18a1P39061 Gm1821-202ENSMUST00000227415 750 ntBASIC17.48■□□□□ 0.39
Col18a1P39061 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Gm10076-201ENSMUST00000073238 384 ntBASIC17.48■□□□□ 0.39
Col18a1P39061 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col18a1P39061 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col18a1P39061 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col18a1P39061 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col18a1P39061 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col18a1P39061 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col18a1P39061 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
Col18a1P39061 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col18a1P39061 Prss46-201ENSMUST00000119427 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col18a1P39061 Gm22138-201ENSMUST00000158748 128 ntBASIC17.47■□□□□ 0.39
Col18a1P39061 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Col18a1P39061 Prss46-202ENSMUST00000176403 1257 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col18a1P39061 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Col18a1P39061 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC17.47■□□□□ 0.39
Col18a1P39061 Gm35822-201ENSMUST00000204954 562 ntTSL 3 BASIC17.47■□□□□ 0.39
Col18a1P39061 Gm9463-201ENSMUST00000206707 601 ntBASIC17.47■□□□□ 0.39
Col18a1P39061 AC165260.3-202ENSMUST00000224550 1031 ntBASIC17.47■□□□□ 0.39
Col18a1P39061 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col18a1P39061 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col18a1P39061 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Col18a1P39061 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col18a1P39061 Gm5525-201ENSMUST00000190438 1312 ntBASIC17.47■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 42.9 ms