Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Msx1P13297 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Msx1P13297 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Msx1P13297 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Msx1P13297 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Msx1P13297 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Msx1P13297 Gm38157-201ENSMUST00000194178 1698 ntBASIC12.92□□□□□ -0.34
Msx1P13297 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Msx1P13297 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Msx1P13297 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Msx1P13297 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Msx1P13297 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC12.92□□□□□ -0.34
Msx1P13297 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Msx1P13297 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Msx1P13297 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC12.91□□□□□ -0.34
Msx1P13297 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Msx1P13297 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Msx1P13297 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC12.91□□□□□ -0.34
Msx1P13297 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Msx1P13297 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Msx1P13297 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Msx1P13297 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Msx1P13297 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Msx1P13297 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Msx1P13297 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Msx1P13297 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Msx1P13297 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Msx1P13297 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
Msx1P13297 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Msx1P13297 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Msx1P13297 Gm45784-201ENSMUST00000188360 142 ntBASIC12.91□□□□□ -0.34
Msx1P13297 Gm29107-201ENSMUST00000190910 347 ntBASIC12.91□□□□□ -0.34
Msx1P13297 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC12.91□□□□□ -0.34
Msx1P13297 A930002H02Rik-201ENSMUST00000208672 1178 ntBASIC12.91□□□□□ -0.34
Msx1P13297 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Msx1P13297 AC155258.1-201ENSMUST00000219303 253 ntBASIC12.91□□□□□ -0.34
Msx1P13297 AC156560.2-201ENSMUST00000221232 264 ntBASIC12.91□□□□□ -0.34
Msx1P13297 AC154806.6-201ENSMUST00000228192 202 ntBASIC12.91□□□□□ -0.34
Msx1P13297 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Msx1P13297 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Msx1P13297 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Msx1P13297 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
Msx1P13297 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC12.91□□□□□ -0.34
Msx1P13297 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Msx1P13297 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
Msx1P13297 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Msx1P13297 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Msx1P13297 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Msx1P13297 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Msx1P13297 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC12.91□□□□□ -0.34
Msx1P13297 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Msx1P13297 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msx1P13297 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msx1P13297 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Msx1P13297 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msx1P13297 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msx1P13297 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msx1P13297 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Msx1P13297 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msx1P13297 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msx1P13297 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msx1P13297 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msx1P13297 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msx1P13297 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC12.9□□□□□ -0.34
Msx1P13297 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msx1P13297 Mup-ps23-201ENSMUST00000118063 630 ntBASIC12.9□□□□□ -0.34
Msx1P13297 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC12.9□□□□□ -0.34
Msx1P13297 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC12.9□□□□□ -0.34
Msx1P13297 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Msx1P13297 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Msx1P13297 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Msx1P13297 Gm8502-201ENSMUST00000185708 901 ntBASIC12.9□□□□□ -0.34
Msx1P13297 Gm8510-201ENSMUST00000189202 895 ntBASIC12.9□□□□□ -0.34
Msx1P13297 Gm2316-201ENSMUST00000190613 921 ntBASIC12.9□□□□□ -0.34
Msx1P13297 2900064F13Rik-201ENSMUST00000202166 1008 ntBASIC12.9□□□□□ -0.34
Msx1P13297 Gm5425-201ENSMUST00000214125 459 ntBASIC12.9□□□□□ -0.34
Msx1P13297 Gm17795-201ENSMUST00000214505 757 ntBASIC12.9□□□□□ -0.34
Msx1P13297 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC12.9□□□□□ -0.34
Msx1P13297 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msx1P13297 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC12.9□□□□□ -0.34
Msx1P13297 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Msx1P13297 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Msx1P13297 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Msx1P13297 Olfr582-201ENSMUST00000098212 960 ntBASIC12.9□□□□□ -0.34
Msx1P13297 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msx1P13297 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Msx1P13297 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Msx1P13297 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msx1P13297 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msx1P13297 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Msx1P13297 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Msx1P13297 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Msx1P13297 CT030159.3-201ENSMUST00000222936 1481 ntTSL 5 BASIC12.9□□□□□ -0.34
Msx1P13297 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Msx1P13297 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msx1P13297 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msx1P13297 AC114543.1-201ENSMUST00000226451 1558 ntBASIC12.9□□□□□ -0.35
Msx1P13297 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Msx1P13297 Gm43399-201ENSMUST00000202546 2374 ntBASIC12.89□□□□□ -0.35
Msx1P13297 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms